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InviteWorkflow Entry: download
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 Version 2 (latest)
(of 2)
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Version created on:
16/07/10 @ 10:44:36
by:
Peter Li
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Revision comments 
Last edited on: 16/07/10 @ 10:53:32 by: Peter Li
Title: download
Type: Taverna 2
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Description
Given a list key, prepare for download a file containing those records in the selected format. The original workflow was written by the PubChem team @ NCBI (http://pubchem.ncbi.nlm.nih.gov/).
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http://www.myexperiment.org/workflows/1435/download?version=2
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Descriptions (2)
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|
Original Uploader |
Created: 24/05/11 @ 13:13:52 | Last updated: 24/05/11 @ 14:19:24
Credits:
Attributions:
License: Creative Commons Attribution-Share Alike 3.0 Unported License
This workflow takes the input file containing chemical names and returns a single SDF file of structures. The names are searched against pubchem compounds via e-search.
If the compound name is found an XML file containing PubChem ID is returned.The max return compound_ID is set to 1 which could be increased. If the compound name is not found then no ID is returned.
The pubchem compound_ID is then used to download structures from PubChem.
Rating: 0.0 / 5 (0 ratings) | Versions: 1 | Reviews: 0 | Comments: 0 | Citations: 0 Viewed: 39 times | Downloaded: 19 times Tags (26): |
 View
 Download (v1)
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|
Original Uploader |
Created: 30/03/09 @ 09:20:42 | Last updated: 30/03/09 @ 09:34:37
Credits:
License: Creative Commons Attribution-Share Alike 3.0 Unported License
Given a list of identifiers (e.g. CID) and their appropriate type (eID_CID - note that these differ slightly from the original identifier name -> CID <-> eID_CID), this workflow queries PubChem via PUG to retrieve a download URL for the resulting XML file containing the results.
Adding support for downloading this XML file and writing it to filesystem is planned.
Rating: 0.0 / 5 (0 ratings) | Versions: 1 | Reviews: 0 | Comments: 0 | Citations: 0 Viewed: 74 times | Downloaded: 52 times Tags (4): |
View
Download (v1)
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Linked Data
Non-Information Resource URI: http://www.myexperiment.org/workflows/1435
Alternative Formats
Copyright © 2007 - 2011 The University of Manchester and University of Southampton
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