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Workflow Entry: Entrez Gene to KEGG Pathway
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 Version 2 (latest)
(of 2)
|
Version created on:
03/10/07 @ 18:36:00
by:
Paul Fisher
|
Revision comments 
Last edited on: 13/11/07 @ 16:16:10 by: Paul Fisher
Title: Entrez Gene to KEGG Pathway
Type: Taverna 1
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Description
This workflow takes in Entrez gene ids then adds the string “ncbi-geneid:” to the start of each gene id. These gene ids are then cross-referenced to KEGG gene ids. Each KEGG gene id is then sent to the KEGG pathway database and its relevant pathways returned.
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Option 2:
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http://www.myexperiment.org/workflows/15/download?version=2
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All versions of this Workflow are licensed under the Creative Commons Attribution 3.0 License.
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1758 viewings
1074 downloads
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Earliest Version:
[1] - Entrez Gene to KEGG Pathway
Latest Version:
[2] - Entrez Gene to KEGG Pathway
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Copyright (c) 2007 - 2008 The University of Manchester and University of Southampton
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If you change
if (trimmedSplit.length == 2)
to
if (trimmedSplit.length == 3)
in
split_gene_ids
it will actually work
You can try 24605 as input
Maybe this is because of a change in the output of Kegg_gene_ids_all_species
Maybe
if (trimmedSplit.length >= 3)
is better since it would allow for future expansions
Otherwise good example of web service usage
/Tommy