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Extract Scientific Terms

Workflow Entry: Extract Scientific Terms

Created at: 08/12/10 @ 11:50:01 Last updated: 11/01/11 @ 11:58:09

Version 2 (latest) (of 2)

Version created on: 11/01/11 @ 11:57:20 by: Paul Fisher | Revision comments Expand

Last edited on: 11/01/11 @ 11:58:09 by: Paul Fisher

Title: Extract Scientific Terms

Type: Taverna 2

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Description

This workflow takes in a document containg text and removes and non-ascii characters. The cleaned text is then sent to a service in dresden to extract all scientific terms. These terms represent a profile for the input document. Any null values are also removed.

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http://www.myexperiment.org/workflows/1712/download?version=2
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Workflow Components

Authors (1)

Titles (1)

Descriptions (1)

Inputs (1)

Name	Description
phenotype_abstracts

Processors (14)

Name	Type	Description
Encode_byte_to_base64	localworker
merge_strings_2	localworker
regex	stringconstant
xpath	stringconstant
extract_abstracts	beanshell
merge_search_and_terms	beanshell
extract_Terms	localworker
merge_strings	localworker
remove_Nulls	beanshell
Remove_duplicate_strings	localworker
parametersXML	xmlsplitter
split_by_regex	localworker
generateTerminology	wsdl
clean_text	soaplab

Beanshells (3)

Name	Inputs	Outputs
extract_abstracts	input	output output_search
merge_search_and_terms	terms search_term	output
remove_Nulls	input	output

Outputs (1)

Name	Description
phenotype_terms

Datalinks (16)

Source	Sink
phenotype_abstracts	Encode_byte_to_base64:bytes
merge_strings:concatenated	merge_strings_2:stringlist
clean_text:output	extract_abstracts:input
merge_strings_2:concatenated	merge_search_and_terms:terms
extract_abstracts:output_search	merge_search_and_terms:search_term
generateTerminology:parameters	extract_Terms:xml-text
xpath:value	extract_Terms:xpath
Remove_duplicate_strings:strippedlist	merge_strings:stringlist
merge_search_and_terms:output	remove_Nulls:input
extract_Terms:nodelist	Remove_duplicate_strings:stringlist
split_by_regex:split	parametersXML:texts
regex:value	split_by_regex:regex
extract_abstracts:output	split_by_regex:string
parametersXML:output	generateTerminology:parameters
Encode_byte_to_base64:base64	clean_text:file_direct_data
remove_Nulls:output	phenotype_terms

Coordinations (0)

Information Workflow Type

Taverna 2

Information Original Uploader

Paul Fisher

Information License

All versions of this Workflow are licensed under:

Information Credits (1)

(People/Groups)

Paul Fisher

Information Attributions (0)

(Workflows/Files)

None

Information Tags (13)

Original Uploader tags

abstracts
|
ascii
|
concept
|
concept profile
|
dresden
|
entity recognition
|
genotype
|
phenotype
|
term
|
term extraction
|
terms
|
text
|
text mining; term extraction; entity recognition

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Information Shared with Groups (2)

Information Featured In Packs (1)

Text Mining Workflows

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Information Ratings (0)

Current:

0.0 / 5

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Information Attributed By (2)

(Workflows/Files)

Information Favourited By (1)

Philip Y.

Information Statistics

156 viewings

327 downloads

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Citations (0)

None

Version History

Earliest Version:
[1] - Extract Scientific Terms

Created on: Wednesday 08 December 2010 @ 11:50:01 (GMT)

Created by: Paul Fisher

Revision comments:

None

Latest Version:
[2] - Extract Scientific Terms

Created on: Tuesday 11 January 2011 @ 11:57:20 (GMT)

Created by: Paul Fisher

Last edited on: Tuesday 11 January 2011 @ 11:58:09 (GMT)

Last edited by: Paul Fisher

Revision comments:

None

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Other workflows that use similar services (1)

Taverna 1

Original Uploader

Paul Fisher

Extract Scientific Terms (v1)

Created: 10/08/09 @ 13:31:07 | Last updated: 10/08/09 @ 13:32:21

Credits: Paul Fisher

License: Creative Commons Attribution-Share Alike 3.0 Unported License

This workflow takes in a document containg text and removes any non-ascii characters. The cleaned text is then sent to a service in Dresden, to extract all scientific terms. These terms represent a concept profile for the input concpet. Any null values are also removed.

Rating: 0.0 / 5 (0 ratings) | Versions: 1 | Reviews: 0 | Comments: 0 | Citations: 0

Viewed: 125 times | Downloaded: 0 times

Tags (18):