Workflow Entry: EBI_InterProScan_with_prompts

Created at: 31/05/08 @ 11:40:35

Version 1 (of 1)

Version created on: 31/05/08 @ 11:40:34 by: Hamish McWilliam | Revision comments Expand

Title: EBI_InterProScan_with_prompts

Type: Taverna 1

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Description

Run an InterProScan analysis using the EBI’s WSInterProScan service (see http://www.ebi.ac.uk/Tools/webservices/services/interproscan). This workflow wraps the EBI_InterProScan workflow to provide a basic user interface which prompts for the required inputs: protien sequence and user e-mail. Other parameters are allowed to default.

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Option 1:

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Note: you need to have both the WHIP Launcher and the Taverna myExperiment/WHIP plugin installed on your machine for this to work. See here for information.

Option 2:

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http://www.myexperiment.org/workflows/205/download?version=1
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Workflow Components

Inputs (0)

Processors (3)

Name	Type	Description
EBI_InterProScan	workflow	Run an InterProScan analysis of a protein sequence.
Ask_for_email	local	User e-mail address.
Ask_for_sequence	local	Input sequence. Either the actual sequence or an entry identifier in database:identifier form (e.g. uniprot:wap_rat).

Outputs (1)

Name	Description
InterProScan_text_result	Tab delimited text InterProScan result.

Links (3)

Sink	Source
EBI_InterProScan:Email_address	Ask_for_email:answer
EBI_InterProScan:Sequence_or_ID	Ask_for_sequence:answer
InterProScan_text_result	EBI_InterProScan:InterProScan_text_result