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Agglomerative clustering of a GEO dataset using RapidAnalytics

Workflow Entry: Agglomerative clustering of a GEO dataset using RapidAnalytics

Created at: 28/04/11 @ 14:12:33 Last updated: 13/12/11 @ 16:00:52

| License | Credits (1) | Attributions (0) | Tags (5) | Featured in Packs (0) | Ratings (0) | Attributed By (0) | Favourited By (0) |
| Citations (0) | Version History | Reviews (0) | Comments (0) |

Information

Version 2 (latest) (of 2)

Version created on: 19/07/11 @ 17:08:24 by: Rishi Ramgolam | Revision comments Expand

Last edited on: 19/07/11 @ 17:12:43 by: Rishi Ramgolam

Title: Agglomerative clustering of a GEO dataset using RapidAnalytics

Type: Taverna 2

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http://www.myexperiment.org/workflows/2090/download?version=2
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Inputs (1)

Processors (11)

Beanshells (2)

Outputs (3)

Datalinks (15)

Source	Sink
geo_dataset_id	eSummary:id
db_value:value	eSummary:db
eSummary:responseBody	extract_sample_ids:xml_text
extract_sample_ids:nodelist	getGSMData:id
getGSMData:responseBody	extract_sample_data_column:xml_text
extract_sample_data_column:nodelist	Flatten_List:inputlist
Flatten_List:outputlist	CSV_table_constructor:listOfData
extract_sample_ids:nodelist	CSV_table_constructor:listOfIDs
extract_sample_type:nodelist	CSV_table_constructor:listOfLabels
eSummary:responseBody	extract_sample_type:xml_text
Agglomerative_Clustering:cluster_model0	show_plot_in_browser:repositoryEntry
CSV_table_constructor:dataTableCSV	upload_data:inputBody
CSV_table_constructor:dataTableCSV	dataTableCSV
extract_sample_ids:nodelist	assay_id
show_plot_in_browser:uri	Beanshell_uri

Coordinations (1)

Information Workflow Type

Information Original Uploader

1505?size=60x60

James Eales

Information License

All versions of this Workflow are licensed under:

Information Credits (1)

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James Eales

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Information Tags (5)

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Information Shared with Groups (2)

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Information Statistics

116 viewings

258 downloads

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Version History

Earliest Version:
[1] - Agglomerative clustering of a GEO dataset using RapidAnalytics

Created on: Thursday 28 April 2011 @ 14:12:33 (GMT)

Created by: James Eales

Last edited on: Thursday 28 April 2011 @ 14:14:05 (GMT)

Last edited by: James Eales

Revision comments:

None

Latest Version:
[2] - Agglomerative clustering of a GEO dataset using RapidAnalytics

Created on: Tuesday 19 July 2011 @ 17:08:24 (GMT)

Created by: Rishi Ramgolam

Last edited on: Tuesday 19 July 2011 @ 17:12:43 (GMT)

Last edited by: Rishi Ramgolam

Revision comments:

Ported to use the latest RapidMiner Plugin (1.0.0 prototype) using Taverna Workbench 2.2.0

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Non-Information Resource URI: http://www.myexperiment.org/workflows/2090

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