Workflow Entry: Distance heatmap of GEO dataset produced by RapidAnalytics

Created at: 28/04/11 @ 14:15:33 Last updated: 13/12/11 @ 16:00:25

Version 2 (latest) (of 2)

Version created on: 19/07/11 @ 17:15:51 by: Rishi Ramgolam | Revision comments Expand

Last edited on: 19/07/11 @ 17:21:03 by: Rishi Ramgolam

Title: Distance heatmap of GEO dataset produced by RapidAnalytics

Type: Taverna 2

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Option 1:

Authors (0)

Titles (0)

Descriptions (0)

Inputs (1)

Name	Description
geo_dataset_id	The id of a GEO DataSet. These usually begin with 'GDS'. But here just enter the numeric portion. The example id is from a DataSet of expression profiles in Mouse in response to the absence of Dicer 1. The DataSet has 5 control and 5 mutant assays. This should be a

Processors (11)

Beanshells (2)

Name	Description	Inputs	Outputs
show_plot		repositoryEntry	uri
CSV_table_constructor		listOfData listOfLabels listOfIDs	dataTableCSV

Outputs (3)

Datalinks (15)

Source	Sink
Cross_Distances:result_set0	show_plot:repositoryEntry
db_value:value	eSummary:db
geo_dataset_id	eSummary:id
eSummary:responseBody	extract_sample_ids:xml_text
extract_sample_ids:nodelist	getGSMData:id
getGSMData:responseBody	extract_sample_data_column:xml_text
extract_sample_data_column:nodelist	Flatten_List:inputlist
Flatten_List:outputlist	CSV_table_constructor:listOfData
extract_sample_ids:nodelist	CSV_table_constructor:listOfIDs
extract_sample_type:nodelist	CSV_table_constructor:listOfLabels
eSummary:responseBody	extract_sample_type:xml_text
CSV_table_constructor:dataTableCSV	upload_data:inputBody
CSV_table_constructor:dataTableCSV	dataTableCSV
extract_sample_ids:nodelist	assay_id
show_plot:uri	show_plot_uri