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InviteWorkflow Entry: get human and mouse phenotypes for a gene
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 Version 2 (latest)
(of 2)
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Version created on:
29/03/12 @ 09:01:05
by:
Tim Beck
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Revision comments 
Title: get human and mouse phenotypes for a gene
Type: Taverna 2
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Description
This workflow gets phenotype annotations associated with human genes and the mouse orthologs from human (GWAS Central) and mouse (EuroPhenome and MGI) databases.
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Run this Workflow in the Taverna Workbench...
Option 1:
Copy and paste this link into File > 'Open workflow location...'
http://www.myexperiment.org/workflows/2131/download?version=2
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Workflow Components
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Titles (4)
Descriptions (1)
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Earliest Version:
[1] - Get Human and Mouse Phenotypes for a Gene
Latest Version:
[2] - get human and mouse phenotypes for a gene
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Other workflows that use similar services
(2)
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Original Uploader |
Created: 30/03/09 @ 09:26:25 | Last updated: 30/03/09 @ 09:47:00
Credits:
License: Creative Commons Attribution-Share Alike 3.0 Unported License
This workflow takes in a search term (e.g. InChI) for search in PubChem pccompound database. The result is an xml file containing summary information about the search term and also a compound image and the compound webpage fetched from Pubchem.
Rating: 0.0 / 5 (0 ratings) | Versions: 1 | Reviews: 0 | Comments: 0 | Citations: 0 Viewed: 93 times | Downloaded: 47 times Tags (12): |
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|
Original Uploader |
Created: 30/03/09 @ 09:30:32 | Last updated: 30/03/09 @ 09:49:13
Credits:
License: Creative Commons Attribution-Share Alike 3.0 Unported License
Workflow that queries MassBank DB to retrieve database identifiers (KEGG, PubChem, InChI) and continue search with them to retrieve pathways from KEGG for given compound identifier,searches PubChem via eutils and PUG, queries ChemSpider for compound information and image.
Note: Usage of ChemSpider web services requires a valid security token - receive one by registering at ChemSpider (look at your profile to see your token)
Rating: 0.0 / 5 (0 ratings) | Versions: 1 | Reviews: 0 | Comments: 0 | Citations: 0 Viewed: 198 times | Downloaded: 0 times Tags (21): |
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Linked Data
Non-Information Resource URI: http://www.myexperiment.org/workflows/2131
Alternative Formats
Copyright © 2007 - 2011 The University of Manchester and University of Southampton
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