myExperiment.org - Workflows - Fasta_string_to_fasta_list (Hamish McWilliam) [Taverna 1 Workflow]

Workflow Entry: Fasta_string_to_fasta_list

Created at: 06/06/08 @ 21:41:29

Version 1 (of 1)

Version created on: 06/06/08 @ 21:41:28 by: Hamish McWilliam | Revision comments Expand

Title: Fasta_string_to_fasta_list

Type: Taverna 1

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Description

Split a string containing a set of sequences in fasta format into a list for fasta formated sequences.

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Workflow Components

Inputs (1)

Name	Description
fasta_string	String containing one or more fasta sequences.

Processors (2)

Name	Type	Description
Split_into_sequences	local	Split string using a regular expression, to get the individual sequences.
Add_angle	beanshell	For sequences where the angle bracket (>), denoting the start of the fasta formated sequence, was removed during the split, prepend it.

Outputs (1)

Name	Description
fasta_list	List of fasta sequences.

Links (3)

Sink	Source
Split_into_sequences:string	fasta_string
fasta_list	Add_angle:full_fasta
Add_angle:stripped_fasta	Split_into_sequences:split

Coordinations (0)

Taverna 1 workflow

Information Original Uploader

Hamish McWilliam

Information License

All versions of this Workflow are licensed under the Creative Commons Attribution 3.0 License.

Information Credits (1)

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Hamish McWilliam

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Information Statistics

332 viewings

234 downloads

Citations (0)

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Version History

Earliest Version:
[1] - Fasta_string_to_fasta_list

Created on: Friday 06 June 2008 @ 21:41:28 (BST)

Created by: Hamish McWilliam

Revision comments:

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This Workflow only has one version.

Comments (2)

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Surajwa...

Hi Hamish,

I am new to Taverna. I am seeing that all the workflows in Taverna are coded in xsculf language. Is it the only way in which the workflow is coded in Taverna? Where can I find the description about using xsculf? Also how to construct the workflow visually. I am concentrating on creating automatic workflows, so I am trying to find very easy workflow that can be generated automatically.

thanks,

Suraj Waghulde.