Workflow Entry: EBI_CiteXplore

Created at: 09/07/08 @ 04:53:56

Version 1 (of 1)

Version created on: 09/07/08 @ 04:53:56 by: Hamish McWilliam | Revision comments Expand

Title: EBI_CiteXplore

Type: Taverna 1

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Description

Perform a literature search using the EBI's CiteXplore service (http://www.ebi.ac.uk/citexplore/), and get the results in a minimal XML format containing the citation information (i.e. title, author, journal, etc.), the identifier of the citation in the source database (PubMed/Medline, Agricola, Patent Abstracts, CBA, CiteSeer, etc.) and information about abstract and full article availablity including URLs.

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Workflow Components

Inputs (1)

Name	Description
Query	Query terms for citation search. For example: auxin resistance This is a Lucene query string, see the CiteXplore help for details of accepted syntax (http://www.ebi.ac.uk/citexplore/help.jsp#query).

Processors (3)

Name	Type	Description
searchCitations	arbitrarywsdl	Submit the search to CiteXplore. See the Service entry for this web service.
Search_Parameters	local	Build the search parameters structure. By default this is set to give the first page of results, in the "core" XML format. See the web service documentation (http://www.ebi.ac.uk/citexplore/webservice.jsp) for more information about the parameters.
Unwrap_result	local	Extract the citations XML for the result returned by CiteXplore.

Beanshells (0)

Outputs (1)

Name	Description
Citations	Citation details from CiteXplore in the "core" XML format. This includes all the citation details (e.g. authors, title, journal, PubMed ID, etc.) and the document availability information and URLs.

Links (4)

Source	Sink
Query	Search_Parameters:luceneQueryString
Search_Parameters:output	searchCitations:parameters
Unwrap_result:return	Citations
searchCitations:parameters	Unwrap_result:input