Workflow Entry: FetchandDisplaySpecies

Created at: 27/11/11 @ 12:44:23 Last updated: 29/11/11 @ 15:34:08

Version 3 (latest) (of 3)

Version created on: 29/11/11 @ 15:34:07 by: Alan Williams | Revision comments Expand

Title: FetchandDisplaySpecies

Type: Taverna 2

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Description

This workflow uses GBIF to search and report species occurrence data and then displays them on Google Earth. An interactive step then allows you to alter the co-ordinates of data displayed.

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http://www.myexperiment.org/workflows/2592/download?version=3
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Workflow Components

Authors (1)

Titles (1)

Descriptions (1)

Inputs (6)

Name	Description
species_name	This input takes the name of the species that is under investigation. Note that the name is case sensitive. Additionally you should not add a newline to the end of the name
maxlat	The maximum latitude of the bounding box
maxlong	The maximum longitude of the bounding box
minlat	The minimum latitude of the bounding box
minlong	The minimum longitude of the bounding box
google_earth_command	This input contains the command used to call Google Earth. Its content will depend upon your operating system and where Google Earth has been installed.

Processors (4)

Name	Type	Description
check_bounding_box	localworker
Fetch_occurrence_data	rest
Show_in_google_earth	externaltool
show_gbif_agreement	beanshell

Beanshells (1)

Name	Description	Inputs	Outputs
show_gbif_agreement			answer

Outputs (7)

Name	Description
kml	The KML corresponding to the occurrences within the selected bounding box
answer
maxlat	The maximum latitude selected for the bounding box for occurrences
maxlong	The maximum longitude selected for the bounding box for occurrences
minlat	The minimum latitude selected for the bounding box for occurrences
minlong	The minimum longitude selected for the bounding box for occurrences
agreement_answer

Datalinks (18)

Source	Sink
maxlat	check_bounding_box:maxlat
maxlong	check_bounding_box:maxlong
minlat	check_bounding_box:minlat
minlong	check_bounding_box:minlong
maxlat	Fetch_occurrence_data:maxlat
maxlong	Fetch_occurrence_data:maxlong
minlat	Fetch_occurrence_data:minlat
minlong	Fetch_occurrence_data:minlong
species_name	Fetch_occurrence_data:species_name
Fetch_occurrence_data:responseBody	Show_in_google_earth:data
google_earth_command	Show_in_google_earth:open_command
Fetch_occurrence_data:responseBody	kml
check_bounding_box:answer	answer
check_bounding_box:maxlat	maxlat
check_bounding_box:maxlong	maxlong
check_bounding_box:minlat	minlat
check_bounding_box:minlong	minlong
show_gbif_agreement:answer	agreement_answer