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Gi_to_pathway.xml

Workflow Entry: Gi_to_pathway.xml

Created at: 12/07/08 @ 09:20:04 Last updated: 12/07/08 @ 20:07:57

Version 1 (of 1)

Version created on: 12/07/08 @ 09:20:04 by: Antoon Goderis | Revision comments Expand

Last edited on: 12/07/08 @ 20:07:57 by: Antoon Goderis

Title: Gi_to_pathway.xml

Type: Taverna 1

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Workflow Components

Inputs (0)

Processors (7)

Name	Type	Description
GETPATHWAYS	arbitrarywsdl
GETIMAGE	local
KEGGBASEURL	stringconstant
add_ncbi_string	beanshell
Kegg_id_conv	arbitrarywsdl	See the Service entry for this web service.
parse_result	beanshell
Gi_number	stringconstant

Beanshells (2)

Name	Description	Inputs	Outputs
add_ncbi_string		input	output
parse_result		input	abbr ids

Outputs (3)

Name	Description
KEGG_pathways
kegg_protein_id
pathway_id

Links (10)

Source	Sink
GETIMAGE:image	KEGG_pathways
GETPATHWAYS:return	GETIMAGE:url
GETPATHWAYS:return	pathway_id
Gi_number:value	add_ncbi_string:input
KEGGBASEURL:value	GETIMAGE:base
Kegg_id_conv:return	parse_result:input
parse_result:abbr	GETPATHWAYS:abbr
parse_result:ids	GETPATHWAYS:oids
Kegg_id_conv:return	kegg_protein_id
add_ncbi_string:output	Kegg_id_conv:string

Coordinations (0)

Information Workflow Type

Taverna 1

Information Original Uploader

Antoon Goderis

Information License

All versions of this Workflow are licensed under:

Information Credits (1)

(People/Groups)

Paul Fisher

Information Attributions (0)

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None

Information Tags (1)

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benchmarks

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Information Shared with Groups (0)

None

Information Featured In Packs (1)

Paul Fisher workflows for benchmarks PR and CA2

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Information Attributed By (0)

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Information Favourited By (1)

Ian Laycock

Information Statistics

367 viewings

670 downloads

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Citations (0)

None

Version History

Earliest Version:
[1] - Gi_to_pathway.xml

Created on: Saturday 12 July 2008 @ 09:20:04 (GMT)

Created by: Antoon Goderis

Last edited on: Saturday 12 July 2008 @ 20:07:57 (GMT)

Last edited by: Antoon Goderis

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