Workflow Entry: swiss_and_name_seq.xml

Created at: 12/07/08 @ 10:07:42 Last updated: 12/07/08 @ 10:07:57

Version 1 (of 1)

Version created on: 12/07/08 @ 10:07:42 by: Antoon Goderis | Revision comments Expand

Last edited on: 12/07/08 @ 10:07:57 by: Antoon Goderis

Title: swiss_and_name_seq.xml

Type: Taverna 1

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Description

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Workflow Components

Inputs (1)

Name	Description
genes_in_region

Processors (12)

Name	Type	Description
options	stringconstant
getGeneInfo	arbitrarywsdl	See the Service entry for this web service.
split_by_regex	local
parse_gene_name	beanshell
parse_swiss	beanshell
options2	stringconstant
regex	stringconstant
parse_ddbj_gene_info	soaplabwsdl	extract information from geneGeneInfo processor at http://xml.nig.ac.jp/wsdl/Ensembl.wsdl
parse_gene_info_2	soaplabwsdl	extract information from geneGeneInfo processor at http://xml.nig.ac.jp/wsdl/Ensembl.wsdl
parse_gene_info_3	soaplabwsdl	extract information from geneGeneInfo processor at http://xml.nig.ac.jp/wsdl/Ensembl.wsdl
options3	stringconstant
parse_sequence	beanshell

Beanshells (3)

Name	Inputs	Outputs
parse_gene_name	input	output
parse_swiss	input	output
parse_sequence	input	output

Outputs (4)

Name	Description
swiss_ids
gene_info
gene_name
sequences

Links (16)

Source	Sink
genes_in_region	split_by_regex:string
getGeneInfo:Result	parse_ddbj_gene_info:file_direct_data
getGeneInfo:Result	parse_gene_info_2:file_direct_data
getGeneInfo:Result	parse_gene_info_3:file_direct_data
options2:value	parse_gene_info_2:options
options3:value	parse_gene_info_3:options
parse_ddbj_gene_info:output	parse_swiss:input
parse_gene_info_2:output	parse_gene_name:input
parse_gene_info_3:output	parse_sequence:input
getGeneInfo:Result	gene_info
options:value	parse_ddbj_gene_info:options
parse_gene_name:output	gene_name
parse_sequence:output	sequences
parse_swiss:output	swiss_ids
regex:value	split_by_regex:regex
split_by_regex:split	getGeneInfo:geneId