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InviteWorkflow Entry: protein_protein_interactions.xml
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 Version 1
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Version created on:
12/07/08 @ 10:27:05
by:
Antoon Goderis
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Revision comments 
Last edited on: 12/07/08 @ 10:27:18 by: Antoon Goderis
Title: protein_protein_interactions.xml
Type: Taverna 1
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Original Uploader |
Created: 21/01/11 @ 16:56:47 | Last updated: 21/01/11 @ 16:58:50
Credits:
License: Creative Commons Attribution-Share Alike 3.0 Unported License
This workflow searches for genes which reside in a QTL (Quantitative Trait Loci) region in Cow, Bos taurus. The workflow requires an input of: a chromosome name or number; a QTL start base pair position; QTL end base pair position. Data is then extracted from BioMart to annotate each of the genes found in this region. The Entrez and UniProt identifiers are then sent to KEGG to obtain KEGG gene identifiers. The KEGG gene identifiers are then used to searcg for pathways in the KEGG pathway data...
Rating: 0.0 / 5 (0 ratings) | Versions: 1 | Reviews: 0 | Comments: 0 | Citations: 0 Viewed: 19 times | Downloaded: 13 times Tags (22): |
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Created: 17/03/10 @ 10:53:02
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License: Creative Commons Attribution-Share Alike 3.0 Unported License
Workflow takes in a text file of microRNAs from microCOSM (at the EBI) and outputs a list of KEGG pathway information, including genes in pathways and pathway abstracts from PubMed. The results can then be used in various text mining applications/workflows to rank the results against a given disease.Workflow takes in a file of microRNAs
Rating: 5.0 / 5 (1 rating) | Versions: 1 | Reviews: 0 | Comments: 0 | Citations: 0 Viewed: 150 times | Downloaded: 2 times Tags (21): |
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Non-Information Resource URI: http://www.myexperiment.org/workflows/310
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