Microbial Metagenomic Trait Statistical Analysis Workflow

Created: 2012-12-19 23:11:08      Last updated: 2014-11-12 09:45:08

This workflow retrieves the following microbial metagenomic traits from the Microbial Metagenomic Trait Database:

-GC content -Variance of GC content -Dinucleotides -Number of rRNA -Codon usage -Amino acid composition -Acidic to basic amino acids ratio -% of Transcriptional factors -% of classified reads -Functional content -Functional diversity -Taxonomic content -Taxonomic diversity

After the retrieval performs the ecological analyses described in Barberan et al. 2012 (http://dx.doi.org/10.1111/j.1365-294X.2011.05383.x)

Please read: https://wiki.biovel.eu/display/doc/Metagenomic+Workflows

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