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InviteWorkflow Entry: Retrieve Protein Sequence
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 Version 1
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Version created on:
30/07/08 @ 16:36:55
by:
Paul Fisher
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Revision comments 
Last edited on: 03/12/09 @ 16:54:03 by: Paul Fisher
Title: Retrieve Protein Sequence
Type: Taverna 1
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Description
Retrieves a protein sequence in Fasta format from GenBank, given a GenBank identifier.
Example input for this workflow is:
EDL10223.1
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http://www.myexperiment.org/workflows/368/download?version=1
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Original Uploader |
Created: 01/09/10 @ 17:16:24 | Last updated: 01/09/10 @ 17:18:45
Credits:
Attributions:
License: Creative Commons Attribution-Share Alike 3.0 Unported License
retrieve protein sequence and do a high speed BLAST from DDBJ Web services
informations on Web services available at http://xml.nig.ac.jp/index.html
example
accession : Q9NRA8
database : ddbjbct
program : tblastn
param : -b 100 -v 100
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Original Uploader |
Created: 15/04/08 @ 15:13:54
Credits:
License: Creative Commons Attribution-Share Alike 3.0 Unported License
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Rating: 0.0 / 5 (0 ratings) | Versions: 1 | Reviews: 0 | Comments: 0 | Citations: 0 Viewed: 52 times | Downloaded: 0 times This Workflow has no tags! |
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Non-Information Resource URI: http://www.myexperiment.org/workflows/368
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Copyright © 2007 - 2011 The University of Manchester and University of Southampton
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it is very nice! but if I want to retrieve the whole protein sequence of some microorganism in fasta formate, for example, Asperigillus Niger, How can i do?