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Retrieve_abstract_from_Medline

Workflow Entry: Retrieve_abstract_from_Medline

Created at: 17/09/08 @ 15:22:56 Last updated: 17/09/08 @ 15:24:22

Version 1 (of 1)

Version created on: 17/09/08 @ 15:22:56 by: Franck Tanoh | Revision comments Expand

Last edited on: 17/09/08 @ 15:24:22 by: Franck Tanoh

Title: Retrieve_abstract_from_Medline

Type: Taverna 1

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Description

This workflow retrieves Medline Abstracts given PMIDs (PubMed id)

You can use: 9879 as input example to test this workflow

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Option 1:

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Note: you need to have both the WHIP Launcher and the Taverna myExperiment/WHIP plugin installed on your machine for this to work. See here for information.

Option 2:

Copy and paste this link into File > 'Open workflow location...'
http://www.myexperiment.org/workflows/394/download?version=1
[ More Info Expand ]

Workflow Components

Inputs (1)

Name	Description
PubMed_id

Processors (4)

Name	Type	Description
queryPmid	arbitrarywsdl	See the Service entry for this web service.
InputParameters	local
Outputparameters	local
PipelineName	stringconstant	possible values: whatizitSwissprotG2; whatizitChebiDict; whatizitOscars3; whatizitPathwaywiki; whatizitEBIMed; whatizitProteinInteraction; whatizitGORanked; whatizitProteinBiolexHuman; whatizitDisease; whatizitOrganisms; whatizitQbmarsdf; whatizitEBIMedDiseaseChemicals; whatizitSwissprotGo; whatizitChemicalsMeta; whatizitGODict; whatizitProteinInteractionPMID; whatizitChemicals; whatizitSwissprotDisease; whatizitDrugs; whatizitSwissprot.

Beanshells (0)

Outputs (1)

Name	Description
MedlineAbstract

Links (5)

Source	Sink
InputParameters:output	queryPmid:parameters
PubMed_id	InputParameters:pmid
PipelineName:value	InputParameters:pipelineName
Outputparameters:return	MedlineAbstract
queryPmid:parameters	Outputparameters:input

Coordinations (0)

Information Workflow Type

Taverna 1

Information Original Uploader

Franck Tanoh

Information License

All versions of this Workflow are licensed under:

Information Credits (1)

(People/Groups)

Franck Tanoh

Information Attributions (0)

(Workflows/Files)

None

Information Tags (3)

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Information Shared with Groups (0)

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Information Featured In Packs (0)

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Information Ratings (1)

Current:

5.0 / 5

(1 rating)

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Information Attributed By (0)

(Workflows/Files)

None

Information Favourited By (2)

Information Statistics

685 viewings

846 downloads

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Citations (0)

None

Version History

Earliest Version:
[1] - Retrieve_abstract_from_Medline

Created on: Wednesday 17 September 2008 @ 15:22:56 (GMT)

Created by: Franck Tanoh

Last edited on: Wednesday 17 September 2008 @ 15:24:22 (GMT)

Last edited by: Franck Tanoh

Revision comments:

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This Workflow only has one version.

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Other workflows that use similar services (1)

Taverna 1

Original Uploader

Hamish McWilliam

EBI_Whatizit (v1)

Created: 09/07/08 @ 05:14:28

Credits: Hamish McWilliam

License: Creative Commons Attribution 3.0 Unported License

Perform a text-mining analysis of an input text document using the EBI's Whatizit tool (http://www.ebi.ac.uk/webservices/whatizit/info.jsf). Whatizit provides a number of text-mining pipelines which can can detect various terms of biological interest in text documents. For example finding gene names and mapping them to UniProtKB identifiers, finding chemical terms and mapping them to ChEBI, etc.

Rating: 5.0 / 5 (1 rating) | Versions: 1 | Reviews: 0 | Comments: 0 | Citations: 0

Viewed: 177 times | Downloaded: 62 times

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