Phenotypic screening annotation: protocol 6

Created: 2016-05-06 11:52:02

This workflow contains protocol 6 as published in Digles et al., Open PHACTS Computational Protocols for in silico Target validation of Cellular Phenotypic Screens: Knowing the Knowns, MedChemComm, submitted.

This workflow requires the Open PHACTS KNIME nodes (org.openphacts.utils.json_1.1.0.zip) available from https://github.com/openphacts/OPS-Knime and the IUPHAR/BPS Guide to Pharmacology data file available from http://guidetopharmacology.org/DATA/interactions.csv.

The workflow returns targets for a list of compound URIs (retrieved in the Protocol 0 metanode) and joins the data with interaction data from IUPHAR/BPS. For each target the highest affinity antagonist and agonist is retained.

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