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bget

Workflow Entry: bget

Created at: 29/09/08 @ 13:58:00

Version 1 (of 1)

Version created on: 29/09/08 @ 13:58:00 by: Franck Tanoh | Revision comments Expand

Title: bget

Type: Taverna 1

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Description

Retrieve database entries specified by a list of entry_id. Number of entry_id retrieves at a time is restricted up to 100

Example of input: eco:b0002 hin:tRNA-Cys-1

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Run

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Option 1:

Launch in Taverna

Note: you need to have both the WHIP Launcher and the Taverna myExperiment/WHIP plugin installed on your machine for this to work. See here for information.

Option 2:

Copy and paste this link into File > 'Open workflow location...'
http://www.myexperiment.org/workflows/499/download?version=1
[ More Info Expand ]

Workflow Components

Inputs (1)

Name	Description
entry	eco:b0002 hin:tRNA-Cys-1

Processors (1)

Name	Type	Description
bget	arbitrarywsdl	See the Service entry for this web service.

Beanshells (0)

Outputs (1)

Name	Description
sequences

Links (2)

Source	Sink
entry	bget:string
bget:return	sequences

Coordinations (0)

Information Workflow Type

Taverna 1

Information Original Uploader

Franck Tanoh

Information License

All versions of this Workflow are licensed under:

Information Credits (1)

(People/Groups)

Franck Tanoh

Information Attributions (0)

(Workflows/Files)

None

Information Tags (1)

Original Uploader tags

bget

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Information Shared with Groups (0)

None

Information Featured In Packs (1)

Example workflow for KEGG web service

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Information Ratings (0)

Current:

0.0 / 5

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Information Attributed By (0)

(Workflows/Files)

None

Information Favourited By (0)

No one

Information Statistics

354 viewings

621 downloads

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Citations (0)

None

Version History

Earliest Version:
[1] - bget

Created on: Monday 29 September 2008 @ 13:58:00 (GMT)

Created by: Franck Tanoh

Revision comments:

None

This Workflow only has one version.

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Taverna 2

Original Uploader

Katy Wolstencroft

NCBI Gi to Kegg Pathway Descriptions (v2)

Created: 12/01/12 @ 09:46:31 | Last updated: 12/01/12 @ 14:54:37

Credits: Katy Wolstencroft

Attributions: NCBI Gi to Kegg Pathways

License: Creative Commons Attribution-Share Alike 3.0 Unported License

This workflow accepts a list of genbank gene identifiers and returns descriptions of gene functions and a list of all pathways each gene is involved in, according to the KEGG database.

Rating: 0.0 / 5 (0 ratings) | Versions: 2 | Reviews: 0 | Comments: 0 | Citations: 0

Viewed: 6 times | Downloaded: 8 times

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