KNIME Workflow for RetroRules and Selenzyme

Created: 2018-07-24 11:41:23      Last updated: 2018-08-11 17:59:09

KNIME Workflow for RetroRules and Selenzyme

This worflow provides an examples of retrieving the RetroRules reaction rules for some given reaction and selecting enzyme sequences using the Selenzyme tool.

1. Input to the workflow: Chemical reactions expressed using public database identifiers.
2. Each reaction queries RetroRules and outputs the corresponding reaction rules.
3. Each reaction rule queries Selenzyem and outputs the selected Uniprot sequences for each rule.
4. Resulting list of selected enzymes is stored in a csv file for further processing.

Release: r20180811

How to cite
Duigou T, Du Lac, M., Carbonell P, Faulon JL. RetroRules: a database of reaction rules for engineering biology.

Please report bugs to pablo.carbonell@manchester.ac.uk

Worfklow Licence: CC BY-SA
P. Carbonell & T. Duigou, 2018.

This work is licensed under the Creative Commons Attribution-ShareAlike 4.0 International License. To view a copy of this license, visit http://creativecommons.org/licenses/by-sa/4.0/.
 

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Creative Commons Attribution-ShareAlike 4.0 International License

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