Phylogeny Bootstrapped Algorithm

Created: 2010-01-13 18:47:06      Last updated: 2010-11-17 13:57:19

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Bootstrapped sequences algorithm description at Queries NCBI Core for specific records (e.g. Definition=19 AND Definition=cadherin AND Definition=gallus)., then runs NCBI BLASTN to retrieve similar sequences. Runs xmknr (Vmatch) to remove duplicate records. Runs  SEQBOOT, then run DNADIST using the output of SEQBOOT as its input, then runs NEIGHBOR using the output of DNADIST as its input, and then run CONSENSE using the tree file from NEIGHBOR as its input


© Copyright 1991-2008 by the University of Washington. Written by Joseph Felsenstein. Permission is granted to copy this document provided that no fee is charged for it and that this copyright notice is not removed.

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