Version 1
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Version created on:
09/03/09 @ 11:38:10
by:
Kieren Lythgow
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Title: Biomart Protein Sequence Retrieval
Type: Taverna 1
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Description
This workflow queries Biomart to retrieve the Ensembl gene id, protein id, gene name, description and amino acid sequence from the Ensembl Homo sapiens dataset. The user needs to specify a defined chromosomal region i.e. Chromo = 1, Start = 100000000, End = 250000000. This returns all unique entries in FASTA format.
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Option 1:
Note: you need to have both the WHIP Launcher and the Taverna myExperiment/WHIP plugin installed on your machine for this to work. See here for information.
Option 2:
Copy and paste this link into File > 'Open workflow location...'
http://www.myexperiment.org/workflows/728/download?version=1
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Earliest Version:
[1] - Biomart Protein Sequence Retrieval
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Linked Data
Non-Information Resource URI: http://www.myexperiment.org/workflows/728
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