Workflow Entry: Biomart Protein Sequence Retrieval

Created at: 09/03/09 @ 11:38:10
Information Version 1 (of 1)

Version created on: 09/03/09 @ 11:38:10 by: Kieren Lythgow   |   Revision comments Expand

Title: Biomart Protein Sequence Retrieval

Type: Taverna 1


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Information Description

This workflow queries Biomart to retrieve the Ensembl gene id, protein id, gene name, description and amino acid sequence from the Ensembl Homo sapiens dataset. The user needs to specify a defined chromosomal region i.e. Chromo = 1, Start = 100000000, End = 250000000. This returns all unique entries in FASTA format.


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Taverna 1

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Version History

Earliest Version:
[1] - Biomart Protein Sequence Retrieval

Created on: Monday 09 March 2009 @ 11:38:10 (GMT)

Created by: Kieren Lythgow

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Non-Information Resource URI: http://www.myexperiment.org/workflows/728


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