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Using CQL to query protein sequence data

Workflow Entry: Using CQL to query protein sequence data

Created at: 07/05/09 @ 14:28:59

Version 1 (of 1)

Version created on: 07/05/09 @ 14:29:01 by: Stian Soiland-Reyes | Revision comments Expand

Title: Using CQL to query protein sequence data

Type: Taverna 2

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Description

To query protein sequence infomation out of 3 caGrid data services: caBIO, CPAS and GridPIR

Adapted from http://www.myexperiment.org/workflows/600

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Workflow Components

Authors (2)

Titles (2)

Descriptions (4)

Inputs (0)

Processors (13)

Name	Type	Description
Extract_SwissProtID_to_GridPIR_query	beanshell
Extract_protSequence_to_caBIO_query	beanshell
caBIO_input_query	xmlsplitter
GridPIR_query_input	xmlsplitter
CPAS_query_output	xmlsplitter
caBIO_input	xmlsplitter
GridPIR_input	xmlsplitter
CPAS_input	xmlsplitter
CPAS_query_input	xmlsplitter
CPAS_query	wsdl
GridPIR_query	wsdl
caBIO_query	wsdl
CPAS_query_P999999	stringconstant

Beanshells (2)

Name	Description	Inputs	Outputs
Extract_SwissProtID_to_GridPIR_query		input	output
Extract_protSequence_to_caBIO_query		input	output

Outputs (3)

Name	Description
CPAS_result
GridPIR_result
caBIO_result

Datalinks (15)

Source	Sink
CPAS_query_output:CQLQueryResultCollection	Extract_SwissProtID_to_GridPIR_query:input
CPAS_query_output:CQLQueryResultCollection	Extract_protSequence_to_caBIO_query:input
Extract_protSequence_to_caBIO_query:output	caBIO_input_query:CQLQuery
Extract_SwissProtID_to_GridPIR_query:output	GridPIR_query_input:CQLQuery
CPAS_query:parameters	CPAS_query_output:input
caBIO_input_query:output	caBIO_input:cqlQuery
GridPIR_query_input:output	GridPIR_input:cqlQuery
CPAS_query_input:output	CPAS_input:cqlQuery
CPAS_query_P999999:value	CPAS_query_input:CQLQuery
CPAS_input:output	CPAS_query:parameters
GridPIR_input:output	GridPIR_query:parameters
caBIO_input:output	caBIO_query:parameters
CPAS_query:parameters	CPAS_result
GridPIR_query:parameters	GridPIR_result
caBIO_query:parameters	caBIO_result

Coordinations (0)

Information Workflow Type

Taverna 2

Information Original Uploader

Stian Soiland-Reyes

Information License

All versions of this Workflow are licensed under:

Information Credits (1)

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Stian Soiland-Reyes

Information Attributions (1)

(Workflows/Files)

Using CQL to query protein sequence data

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Information Statistics

1009 viewings

753 downloads

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Citations (0)

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Version History

Earliest Version:
[1] - Using CQL to query protein sequence data

Created on: Thursday 07 May 2009 @ 14:29:01 (GMT)

Created by: Stian Soiland-Reyes

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Other workflows that use similar services (1)

Taverna 1

Original Uploader

Wei Tan

Using CQL to query protein sequence data (v1)

Created: 05/12/08 @ 22:03:03 | Last updated: 14/07/09 @ 19:32:17

Credits: Wei Tan

License: Creative Commons Attribution-Share Alike 3.0 Unported License

To query protein sequence infomation out of 3 caGrid data services: caBIO, CPAS and GridPIR. Scientific value To query protein sequence information out of 3 caGrid data services: caBIO, CPAS and GridPIR. To analyze a protein sequence from different data sources. Steps Querying CPAS and get the id, name, value of the sequence. Querying caBIO and GridPIR using the id or name obtained from CPAS.

Rating: 0.0 / 5 (0 ratings) | Versions: 1 | Reviews: 0 | Comments: 0 | Citations: 0

Viewed: 181 times | Downloaded: 56 times

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