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InviteWorkflow Entry: Query dbsnp, transform to HTML
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 Version 1
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Version created on:
21/05/09 @ 22:01:55
by:
Pierre Lindenbaum
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Last edited on: 21/05/09 @ 23:12:34 by: Pierre Lindenbaum
Title: Query dbsnp, transform to HTML
Type: XProc
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Description
This is a XProc worklow. Its input is a list of Entrez queries packed in a html list:
See http://plindenbaum.blogspot.com/2009/05/xml-pipelines-xproc-for-bioinformatics.html
it queries entrez, download the SNPs as XML and transform the result as an HTML table:
| rs# | dbSnpBuild | group | build | Chrom | Position |
|---|---|---|---|---|---|
| rs28928870 | 129 | Celera | 36_3 | chr2 | 49031258 |
| rs28928870 | 129 | HuRef | 36_3 | chr2 | 48924538 |
| rs28928870<!-- a--> | 129 | reference | 36_3 | chr2 | 49044117 |
| rs16858811 | 129 | Celera | 36_3 | chr2 | 212796427 |
| (...) | |||||
| rs10171150 | 129 | reference | 36_3 | chr2 | 2090 |
| rs10168026 | <t>129</t>CRA_TCAGchr7v2 | 36_3 | chr7 | 122827 | |
| rs10168026 | 129 | Celera | 36_3 | chr2 | 71241 |
| rs10168026 | 129 | HuRef | 36_3 | chr2 | 4967 |
| rs10168026 | 129 | referenc e | 36_3 | chr2 | 4484 |
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Non-Information Resource URI: http://www.myexperiment.org/workflows/762
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