G-language Genome Analysis Environment - Bacteria Analysis System

Created: 2010-04-05 06:08:25      Last updated: 2010-04-05 06:08:26

Given an identifier for genome sequence (by default, genome of Mycoplasma genitalium: refseq:NC_000908) or raw sequence data in FASTA format, this workflow calculates and graphs the following properties using the G-language Genome Analysis Environment: GC skew (gcskew), cumulative GC skew (gcskew_cumulative), GC skew of coding/intergenic/GC3 (genomicskew), GC content with sliding windows (gcwin), replication origin and terminus (find_ori_ter), codon usage table (codon_usage), the Codon Adaptation Index (cai), nucleotide composition around the start/stop codons calculated with different information theory measures (view_cds, base_information_content, base_entropy, base_relative_entropy). See http://www.g-language.org/ for more information about the G-language Genome Analysis Environment.


This workflow calculates the Student's T-test and Pearson/Spearman correlations. See http://www.g-language.org/ for more information about the G-language Genome Analysis Environment.

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Workflow Other workflows that use similar services (10)

Only the first 2 workflows that use similar services are shown. View all workflows that use these services.


Workflow G-language Genome Analysis Environment - B... (2)

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Given a numerical vector (array), this workflow calculates the maximum value (max) and its index (maxdex), minumum value (min) and its index (mindex), mean, sum, median, and standard deviation. See http://www.g-language.org/ for more information about the G-language Genome Analysis Environment.

Created: 2010-04-05

Credits: User cory (Kazuki Oshita)

Workflow G-language Genome Analysis Environment - G... (2)

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This workflow calculates and graphs the GC skew of a given genome sequence. Use this as a template for using more than 100 analysis programs implemented in G-language Genome Analysis Environment, which can be used in a similar manner. See http://www.g-language.org/ for more information about the G-language Genome Analysis Environment.

Created: 2010-04-05

Credits: User cory (Kazuki Oshita)