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InviteWorkflow Entry: G-language Genome Analysis Environment - GC skew analysis (sequence retrieval via togoWS)
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 Version 2 (latest)
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Version created on:
05/04/10 @ 06:24:02
by:
cory (Kazuki Oshita)
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Title: G-language Genome Analysis Environment - GC skew analysis (sequence retrieval via togoWS)
Type: Taverna 2
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Description
This workflow calculates and graphs the GC skew (by default, for keto bases, with window size of 1000) of a given genome sequence identifier. Here the genome sequence in Fasta format is downloaded through the Togo Web Service with RefSeq identifier. See http://www.g-language.org/ for more information about the G-language Genome Analysis Environment.
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Original Uploader |
Created: 05/04/10 @ 06:13:16 | Last updated: 05/04/10 @ 06:13:17
Credits:
License: Creative Commons Attribution-Share Alike 3.0 Unported License
This workflow shows simple sequence manipulation functions of G-language GAE, such as random shuffling, obtaining a reverse complement, and translation of nucleotide sequences, and showing basic composition statistics for nucleotide and amino acid sequences. See http://www.g-language.org/ for more information about the G-language Genome Analysis Environment.
Rating: 0.0 / 5 (0 ratings) | Versions: 2 | Reviews: 0 | Comments: 0 | Citations: 0 Viewed: 21 times | Downloaded: 17 times Tags (5): |
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Original Uploader |
Created: 05/04/10 @ 06:22:28
Credits:
License: Creative Commons Attribution-Share Alike 3.0 Unported License
This workflow calculates and graphs the GC skew of a given genome sequence (for the entire genome, for only the coding sequences, for only the intergenic regions, and for only the third codon positions), as well as the GC content with sliding windows. See http://www.g-language.org/ for more information about the G-language Genome Analysis Environment.
Rating: 0.0 / 5 (0 ratings) | Versions: 2 | Reviews: 0 | Comments: 0 | Citations: 0 Viewed: 25 times | Downloaded: 23 times Tags (5): |
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Non-Information Resource URI: http://www.myexperiment.org/workflows/802
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Copyright © 2007 - 2011 The University of Manchester and University of Southampton
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