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G-language Genome Analysis Environment - GC skew analysis (AT skew)

Workflow Entry: G-language Genome Analysis Environment - GC skew analysis (AT skew)

Created at: 05/04/10 @ 06:17:25 Last updated: 09/01/11 @ 06:08:19

Version 3 (latest) (of 3)

Version created on: 09/01/11 @ 06:06:03 by: cory (Kazuki Oshita) | Revision comments Expand

Last edited on: 09/01/11 @ 06:08:19 by: cory (Kazuki Oshita)

Title: G-language Genome Analysis Environment - GC skew analysis (AT skew)

Type: Taverna 2

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Description

This workflow calculates and graphs the AT skew of a given genome sequence, using options of gcskew program. See http://www.g-language.org/ for more information about the G-language Genome Analysis Environment.

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Workflow Components

Authors (0)

Titles (0)

Descriptions (0)

Inputs (0)

Processors (11)

Name	Type	Description
gcskew	wsdl	See the Service entry for this web service.
genomicskew	wsdl	See the Service entry for this web service.
gcwin	wsdl	See the Service entry for this web service.
Get_Image_From_URL	localworker
Get_Image_From_URL0	localworker
Get_Image_From_URL1	localworker
at_value	stringconstant
gcskew_params	xmlsplitter
gcwin_params	xmlsplitter
genomicskew_params	xmlsplitter
in0	stringconstant

Beanshells (0)

Outputs (3)

Name	Description
gcskew
genomicSkew
gcwin

Datalinks (18)

Source	Sink
gcskew_params:output	gcskew:params
in0:value	gcskew:in0
in0:value	gcskew:sequence
genomicskew_params:output	genomicskew:params
in0:value	genomicskew:in0
in0:value	genomicskew:sequence
gcwin_params:output	gcwin:params
in0:value	gcwin:in0
in0:value	gcwin:sequence
gcskew:result	Get_Image_From_URL:url
genomicskew:result	Get_Image_From_URL0:url
gcwin:result	Get_Image_From_URL1:url
at_value:value	gcskew_params:at
at_value:value	gcwin_params:at
at_value:value	genomicskew_params:at
Get_Image_From_URL:image	gcskew
Get_Image_From_URL0:image	genomicSkew
Get_Image_From_URL1:image	gcwin

Coordinations (0)

Information Workflow Type

Taverna 2

Information Original Uploader

cory (Kazuki Oshita)

Information License

All versions of this Workflow are licensed under:

Information Credits (1)

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cory (Kazuki Oshita)

Information Attributions (0)

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None

Information Tags (5)

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Information Statistics

481 viewings

627 downloads

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Citations (0)

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Version History

Earliest Version:
[1] - G-language Genome Analysis Environment - GC skew analysis (AT skew)

Created on: Saturday 27 June 2009 @ 09:19:10 (GMT)

Created by: cory (Kazuki Oshita)

Last edited on: Saturday 27 June 2009 @ 09:24:11 (GMT)

Last edited by: cory (Kazuki Oshita)

Revision comments:

None

Previous Versions:
[2] - G-language Genome Analysis Environment - GC skew analysis (AT skew)

Created on: Monday 05 April 2010 @ 06:17:25 (GMT)

Created by: cory (Kazuki Oshita)

Revision comments:

Corresponding to a new version of G-language SOAP service.

Latest Version:
[3] - G-language Genome Analysis Environment - GC skew analysis (AT skew)

Created on: Sunday 09 January 2011 @ 06:06:03 (GMT)

Created by: cory (Kazuki Oshita)

Last edited on: Sunday 09 January 2011 @ 06:08:19 (GMT)

Last edited by: cory (Kazuki Oshita)

Revision comments:

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Other workflows that use similar services (10)

Only the first 2 workflows that use similar services are shown. View all workflows that use these services.

Taverna 2

Original Uploader

cory (Kazuki Oshita)

G-language Genome Analysis Environment - Basic sequence manipulations (v2)

Created: 05/04/10 @ 06:13:16 | Last updated: 05/04/10 @ 06:13:17

Credits: cory (Kazuki Oshita)

License: Creative Commons Attribution-Share Alike 3.0 Unported License

This workflow shows simple sequence manipulation functions of G-language GAE, such as random shuffling, obtaining a reverse complement, and translation of nucleotide sequences, and showing basic composition statistics for nucleotide and amino acid sequences. See http://www.g-language.org/ for more information about the G-language Genome Analysis Environment.

Rating: 0.0 / 5 (0 ratings) | Versions: 2 | Reviews: 0 | Comments: 0 | Citations: 0

Viewed: 23 times | Downloaded: 18 times

Tags (5):

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Download (v2)

Taverna 2

Original Uploader

cory (Kazuki Oshita)

G-language Genome Analysis Environment - GC skew analysis (multiple) (v2)

Created: 05/04/10 @ 06:22:28

Credits: cory (Kazuki Oshita)

License: Creative Commons Attribution-Share Alike 3.0 Unported License

This workflow calculates and graphs the GC skew of a given genome sequence (for the entire genome, for only the coding sequences, for only the intergenic regions, and for only the third codon positions), as well as the GC content with sliding windows. See http://www.g-language.org/ for more information about the G-language Genome Analysis Environment.

Rating: 0.0 / 5 (0 ratings) | Versions: 2 | Reviews: 0 | Comments: 0 | Citations: 0

Viewed: 29 times | Downloaded: 25 times

Tags (5):