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EBI InterproScan T2

Workflow Entry: EBI InterproScan T2

Created at: 30/06/09 @ 11:24:07 Last updated: 30/06/09 @ 11:25:38

Version 1 (of 1)

Version created on: 30/06/09 @ 11:24:07 by: Paolo | Revision comments Expand

Last edited on: 30/06/09 @ 11:25:39 by: Paolo

Title: EBI InterproScan T2

Type: Taverna 2

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Description

This T2 version of the Interpro scan workflow is an example of the while loop in action.

This is used to poll the async EBI service for the result (busy waiting)

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Workflow Components

Authors (2)

Titles (3)

Descriptions (1)

Inputs (2)

Name	Description
Email_address
Sequence_or_ID

Processors (17)

Name	Type	Description
Input_data	xmlsplitter
Get_XML_result	wsdl	See the Service entry for this web service.
Format_as_GFF	beanshell
Job_params	xmlsplitter
Unpack_XML_result	localworker
Get_text_result	wsdl	See the Service entry for this web service.
runInterProScan	wsdl	See the Service entry for this web service.
Content_list	xmlsplitter
Unpack_text_result	localworker
Input_data_type_defaultValue	stringconstant
Get_XML_result_type_defaultValue	stringconstant
Job_params_crc_defaultValue	stringconstant
Job_params_seqtype_defaultValue	stringconstant
Job_params_goterms_defaultValue	stringconstant
Job_params_async_defaultValue	stringconstant
Get_text_result_type_defaultValue	stringconstant
checkStatus	wsdl	See the Service entry for this web service.

Beanshells (1)

Name	Description	Inputs	Outputs
Format_as_GFF		interproscan_text	interproscan_gff

Outputs (5)

Name	Description
InterProScan_text_result
InterProScan_XML_result
Job_ID
InterProScan_GFF
status

Datalinks (23)

Source	Sink
Sequence_or_ID	Input_data:content
Input_data_type_defaultValue:value	Input_data:type
runInterProScan:jobid	Get_XML_result:jobid
Get_XML_result_type_defaultValue:value	Get_XML_result:type
Unpack_text_result:string	Format_as_GFF:interproscan_text
Job_params_seqtype_defaultValue:value	Job_params:seqtype
Job_params_crc_defaultValue:value	Job_params:crc
Job_params_goterms_defaultValue:value	Job_params:goterms
Job_params_async_defaultValue:value	Job_params:async
Email_address	Job_params:email
Get_XML_result:result	Unpack_XML_result:bytes
Get_text_result_type_defaultValue:value	Get_text_result:type
runInterProScan:jobid	Get_text_result:jobid
Content_list:output	runInterProScan:content
Job_params:output	runInterProScan:params
Input_data:output	Content_list:WSArrayofData
Get_text_result:result	Unpack_text_result:bytes
runInterProScan:jobid	checkStatus:jobid
Unpack_text_result:string	InterProScan_text_result
Unpack_XML_result:string	InterProScan_XML_result
runInterProScan:jobid	Job_ID
Format_as_GFF:interproscan_gff	InterProScan_GFF
checkStatus:status	status

Coordinations (2)

Controller	Target
checkStatus	Get_text_result
checkStatus	Get_XML_result

Information Workflow Type

Taverna 2

Information Original Uploader

Paolo

Information License

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Information Credits (2)

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Information Attributions (1)

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Information Attributed By (2)

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Information Favourited By (0)

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Information Statistics

656 viewings

590 downloads

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Citations (0)

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Version History

Earliest Version:
[1] - EBI InterproScan T2

Created on: Tuesday 30 June 2009 @ 11:24:07 (GMT)

Created by: Paolo

Last edited on: Tuesday 30 June 2009 @ 11:25:39 (GMT)

Last edited by: Paolo

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This Workflow only has one version.

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Other workflows that use similar services (17)

Only the first 2 workflows that use similar services are shown. View all workflows that use these services.

Taverna 2

Original Uploader

Stian Soiland-Reyes

EBI_InterProScan for Taverna 2 (v2)

Created: 26/01/10 @ 14:46:07 | Last updated: 26/01/10 @ 14:46:08

Credits: Stian Soiland-Reyes Paolo Katy Wolstencroft Hamish McWilliam

Attributions: EBI InterproScan T2 EBI_InterProScan

License: Creative Commons Attribution-Share Alike 3.0 Unported License

Perform an InterProScan analysis of a protein sequence using the EBI’s WSInterProScan service (see http://www.ebi.ac.uk/Tools/webservices/services/interproscan). The input sequence to use and the user e-mail address are inputs, the other parameters for the analysis (see Job_params) are allowed to default. InterProScan searches a protein sequence against the protein family and domain signature databases integrated into InterPro (see http://www.ebi.ac.uk/interpro/). A set of matches to the sig...

Rating: 0.0 / 5 (0 ratings) | Versions: 2 | Reviews: 0 | Comments: 0 | Citations: 0

Viewed: 175 times | Downloaded: 122 times

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