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Get Bioentity from Organism

Workflow Entry: Get Bioentity from Organism

Created at: 08/09/09 @ 15:12:57 Last updated: 14/09/09 @ 14:16:40

Version 1 (of 1)

Version created on: 08/09/09 @ 15:12:57 by: Pedro Lopes | Revision comments Expand

Last edited on: 14/09/09 @ 14:16:41 by: Pedro Lopes

Title: Get Bioentity from Organism

Type: Taverna 2

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Description

GeNS workflow that lists the identifiers corresponding to a given species and data type. For instance, list all OMIM associated with the human species.

Disclaimer: This workflow is just a simple example designed for academic purposes.

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http://www.myexperiment.org/workflows/906/download?version=1
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Workflow Components

Authors (1)

Titles (1)

Descriptions (1)

Inputs (2)

Name	Description
Organism	The desired Organism
DataType	The desired Data Type

Processors (19)

Name	Type	Description
SearchBioEntity	wsdl	See the Service entry for this web service.
SearchBioEntityIn	xmlsplitter
SearchBioEntityOut	xmlsplitter
ListDataTypes	wsdl	See the Service entry for this web service.
ListDataTypesIn	xmlsplitter
ListDataTypesOut	xmlsplitter
SelectTaxId	localworker
TaxIdQuery	stringconstant
SearchOrganism	wsdl	See the Service entry for this web service.
SearchOrganismIn	xmlsplitter
SearchOrganismOut	xmlsplitter
SelectDataType	localworker
DataTypeQuery	stringconstant
ConcatTaxIdComma	localworker
Comma	stringconstant
ConcatTaxIdCommaDataType	localworker
SelectAlias	localworker
AliasQuery	stringconstant
AliasList2String	localworker

Beanshells (0)

Outputs (1)

Name	Description
Final

Datalinks (22)

Source	Sink
SearchBioEntityIn:output	SearchBioEntity:parameters
ConcatTaxIdCommaDataType:output	SearchBioEntityIn:data
SearchBioEntity:parameters	SearchBioEntityOut:input
ListDataTypesIn:output	ListDataTypes:parameters
DataType	ListDataTypesIn:data
ListDataTypes:parameters	ListDataTypesOut:input
TaxIdQuery:value	SelectTaxId:xpath
SearchOrganismOut:SearchOrganismResult	SelectTaxId:xml-text
SearchOrganismIn:output	SearchOrganism:parameters
Organism	SearchOrganismIn:data
SearchOrganism:parameters	SearchOrganismOut:input
DataTypeQuery:value	SelectDataType:xpath
ListDataTypesOut:ListDataTypesResult	SelectDataType:xml-text
SelectTaxId:nodelist	ConcatTaxIdComma:string1
Comma:value	ConcatTaxIdComma:string2
ConcatTaxIdComma:output	ConcatTaxIdCommaDataType:string1
SelectDataType:nodelist	ConcatTaxIdCommaDataType:string2
AliasQuery:value	SelectAlias:xpath
SearchBioEntityOut:SearchBioEntityResult	SelectAlias:xml-text
Comma:value	AliasList2String:seperator
SelectAlias:nodelist	AliasList2String:stringlist
AliasList2String:concatenated	Final

Coordinations (0)

Information Workflow Type

Taverna 2

Information Original Uploader

Pedro Lopes

Information License

All versions of this Workflow are licensed under:

Information Credits (1)

(People/Groups)

Pedro Lopes

Information Attributions (0)

(Workflows/Files)

None

Information Tags (5)

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Information Attributed By (0)

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Information Favourited By (0)

No one

Information Statistics

353 viewings

527 downloads

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Citations (0)

None

Version History

Earliest Version:
[1] - Get Bioentity from Organism

Created on: Tuesday 08 September 2009 @ 15:12:57 (GMT)

Created by: Pedro Lopes

Last edited on: Monday 14 September 2009 @ 14:16:41 (GMT)

Last edited by: Pedro Lopes

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Other workflows that use similar services (4)

Only the first 2 workflows that use similar services are shown. View all workflows that use these services.

Taverna 2

Original Uploader

Pedro Lopes

Sample Entity Converter (v1)

Created: 08/09/09 @ 15:13:44 | Last updated: 14/09/09 @ 14:14:32

Credits: Pedro Lopes

License: Creative Commons Attribution-Share Alike 3.0 Unported License

Disclaimer: This workflow is just a simple example designed for academic purposes.

Rating: 0.0 / 5 (0 ratings) | Versions: 1 | Reviews: 0 | Comments: 0 | Citations: 0

Viewed: 94 times | Downloaded: 15 times

Tags (6):

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Download (v1)

Taverna 2

Original Uploader

Pedro Lopes

Search GeNS DataType (v1)

Created: 15/09/09 @ 11:36:00

Credits: Pedro Lopes

License: Creative Commons Attribution-Share Alike 3.0 Unported License

This workflow returns a single GeNS identifier corresponding to the given data type. Disclaimer: This workflow is just a simple example designed for academic purposes.

Rating: 0.0 / 5 (0 ratings) | Versions: 1 | Reviews: 0 | Comments: 0 | Citations: 0

Viewed: 23 times | Downloaded: 16 times

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What is this?

Linked Data

Non-Information Resource URI: http://www.myexperiment.org/workflows/906

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