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Sample Entity Converter

Workflow Entry: Sample Entity Converter

Created at: 08/09/09 @ 15:13:44 Last updated: 14/09/09 @ 14:14:32

Version 1 (of 1)

Version created on: 08/09/09 @ 15:13:44 by: Pedro Lopes | Revision comments Expand

Last edited on: 14/09/09 @ 14:14:33 by: Pedro Lopes

Title: Sample Entity Converter

Type: Taverna 2

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Description

Disclaimer: This workflow is just a simple example designed for academic purposes.

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Workflow Components

Authors (0)

Titles (0)

Descriptions (0)

Inputs (2)

Name	Description
Organism	Desired Organism
DataType	The desired Data Type

Processors (29)

Name	Type	Description
ListDataTypes	wsdl	See the Service entry for this web service.
ListDataTypesIn	xmlsplitter
ListDataTypesOut	xmlsplitter
ProteinName	stringconstant
SearchOrganism	wsdl	See the Service entry for this web service.
SearchOrganismIn	xmlsplitter
SearchOrganismOut	xmlsplitter
SelectDataTypeId	localworker
DataTypeQuery	stringconstant
SelectTaxId	localworker
TaxIdQuery	stringconstant
SearchProtein	wsdl	See the Service entry for this web service.
SearchProteinIn	xmlsplitter
SearchProteinOut	xmlsplitter
ConcatTaxIdComma	localworker
Comma	stringconstant
ConcatTaxIdCommaDataType	localworker
Concat2Protein	localworker
CommaOne	stringconstant
ConvertIdentifier	wsdl	See the Service entry for this web service.
SelectAlias	localworker
AliasQuery	stringconstant
ListDataTypes2	wsdl	See the Service entry for this web service.
ListDataTypes2In	xmlsplitter
ListDataTypes2Out	xmlsplitter
SelectDataType2	localworker
ConvertIdentifierIn	xmlsplitter
ConvertIdentifierOut	xmlsplitter
SelectAlias2	localworker

Beanshells (0)

Outputs (1)

Name	Description
Final

Datalinks (34)

Source	Sink
ListDataTypesIn:output	ListDataTypes:parameters
ProteinName:value	ListDataTypesIn:data
ListDataTypes:parameters	ListDataTypesOut:input
SearchOrganismIn:output	SearchOrganism:parameters
Organism	SearchOrganismIn:data
SearchOrganism:parameters	SearchOrganismOut:input
DataTypeQuery:value	SelectDataTypeId:xpath
ListDataTypesOut:ListDataTypesResult	SelectDataTypeId:xml-text
TaxIdQuery:value	SelectTaxId:xpath
SearchOrganismOut:SearchOrganismResult	SelectTaxId:xml-text
SearchProteinIn:output	SearchProtein:parameters
Concat2Protein:output	SearchProteinIn:data
SearchProtein:parameters	SearchProteinOut:input
SelectTaxId:nodelist	ConcatTaxIdComma:string1
Comma:value	ConcatTaxIdComma:string2
ConcatTaxIdComma:output	ConcatTaxIdCommaDataType:string1
SelectDataTypeId:nodelist	ConcatTaxIdCommaDataType:string2
ConcatTaxIdCommaDataType:output	Concat2Protein:string1
CommaOne:value	Concat2Protein:string2
ConvertIdentifierIn:output	ConvertIdentifier:parameters
AliasQuery:value	SelectAlias:xpath
SearchProteinOut:SearchProteinResult	SelectAlias:xml-text
ListDataTypes2In:output	ListDataTypes2:parameters
DataType	ListDataTypes2In:data
ListDataTypes2:parameters	ListDataTypes2Out:input
ListDataTypes2Out:ListDataTypesResult	SelectDataType2:xml-text
DataTypeQuery:value	SelectDataType2:xpath
SelectAlias:nodelist	ConvertIdentifierIn:alias
SelectDataType2:nodelist	ConvertIdentifierIn:datatype
SelectTaxId:nodelist	ConvertIdentifierIn:taxID
ConvertIdentifier:parameters	ConvertIdentifierOut:input
AliasQuery:value	SelectAlias2:xpath
ConvertIdentifierOut:ConvertIdentifierResult	SelectAlias2:xml-text
SelectAlias2:nodelist	Final

Coordinations (0)

Information Workflow Type

Taverna 2

Information Original Uploader

Pedro Lopes

Information License

All versions of this Workflow are licensed under:

Information Credits (1)

(People/Groups)

Pedro Lopes

Information Attributions (0)

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None

Information Tags (6)

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Information Attributed By (0)

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Information Favourited By (0)

No one

Information Statistics

476 viewings

564 downloads

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Citations (0)

None

Version History

Earliest Version:
[1] - Sample Entity Converter

Created on: Tuesday 08 September 2009 @ 15:13:44 (GMT)

Created by: Pedro Lopes

Last edited on: Monday 14 September 2009 @ 14:14:33 (GMT)

Last edited by: Pedro Lopes

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This Workflow only has one version.

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Other workflows that use similar services (4)

Only the first 2 workflows that use similar services are shown. View all workflows that use these services.

Taverna 2

Original Uploader

Pedro Lopes

Search GeNS DataType (v1)

Created: 15/09/09 @ 11:36:00

Credits: Pedro Lopes

License: Creative Commons Attribution-Share Alike 3.0 Unported License

This workflow returns a single GeNS identifier corresponding to the given data type. Disclaimer: This workflow is just a simple example designed for academic purposes.

Rating: 0.0 / 5 (0 ratings) | Versions: 1 | Reviews: 0 | Comments: 0 | Citations: 0

Viewed: 23 times | Downloaded: 16 times

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