Log in
Register
Give us Feedback
InviteWorkflow Entry: DNA sequence analysis pilot (Blat)
| Citations (0) | Version History | Reviews (0) | Comments (0) |
 Version 2 (latest)
(of 2)
|
Version created on:
20/11/09 @ 11:12:43
by:
Angela Luijf
|
Revision comments 
Last edited on: 30/11/09 @ 09:35:39 by: Angela Luijf
Title: DNA sequence analysis pilot (Blat)
Type: Taverna 1
Preview
(Click on the image to get the full size)
Description
http://amc-app1.amc.sara.nl/twiki/bin/view/
Workflow-based DNA sequence analysis on the Dutch Life Science Grid.
This workflow is based on http://www.myexperiment.org/workflows/840 , the last component (Blast analysis) is replaced by Blat analysis
Download
Run
Run this Workflow in the Taverna Workbench...
Option 1:
Launch in TavernaNote: you need to have both the WHIP Launcher and the Taverna myExperiment/WHIP plugin installed on your machine for this to work. See here for information.
Option 2:
Copy and paste this link into File > 'Open workflow location...'
http://www.myexperiment.org/workflows/960/download?version=2
[ More Info ]
Workflow Components
Workflow Type
Log in to add Tags
Shared with Groups (0)
None
Current:
0.0 / 5
(0 ratings)
Log in to rate and see breakdown of ratings
Statistics
None
Earliest Version:
[1] - DNA sequence analysis pilot (Blat)
Latest Version:
[2] - DNA sequence analysis pilot (Blat)
Reviews
(0)
Other workflows that use similar services
(7)
Only the first 2 workflows that use similar services are shown. View all workflows that use these services.
|
Original Uploader |
Created: 18/03/08 @ 16:40:42 | Last updated: 19/05/08 @ 15:56:35
Credits:
License: Creative Commons Attribution-Share Alike 3.0 Unported License
This is an attempt to implement the feat application from the fsl fMRI package www.fmrib.ox.ac.uk/fsl/fsl/whatsnew.html into a Scufl workflow. Details are still being polished but the general structure is here. The main problem that we have with such workflows concerns data provenance. Each of the services is typically iterated on hundreds of data sets and keeping track of the produced files is a pain.
Rating: 4.0 / 5 (2 ratings) | Versions: 3 | Reviews: 0 | Comments: 0 | Citations: 0 Viewed: 229 times | Downloaded: 2 times Tags (1): |
 View
|
|
Original Uploader |
Created: 23/05/09 @ 17:49:08 | Last updated: 23/05/09 @ 17:52:04
Credits:
License: Creative Commons Attribution-Share Alike 3.0 Unported License
Applications details in the following paper:
Ketan Maheshwari, Tristan Glatard, Joel Schaerer, Bertrand Delhay, Sorina Camarasu, Patrick Clarysse, Johan Montagnat. "Towards Production-level Cardiac Image Analysis with Grids" in Proceedings of the HealthGrid'09, Berlin, 28-30 june 2009
The 3 green boxes are run on the EGEE grid. Addional Beanshells have been added to transfer results from EGEE Storage Elements to a web server, to allow for better interactivity.
Rating: 0.0 / 5 (0 ratings) | Versions: 1 | Reviews: 0 | Comments: 0 | Citations: 0 Viewed: 46 times | Downloaded: 24 times Tags (1): |
View
 Download (v1)
|
Linked Data
Non-Information Resource URI: http://www.myexperiment.org/workflows/960
Alternative Formats
Copyright © 2007 - 2011 The University of Manchester and University of Southampton
No comments yet
Log in to make a comment