caArray data retrieving

Wsdl

Wsdl Operation

Script

searchHyb = "";

Script

import java.io.File;
import java.util.ArrayList;
import java.util.List;
import java.io.IOException;
import java.io.StringReader;
import java.io.StringWriter;
import javax.xml.parsers.DocumentBuilder;
import javax.xml.parsers.DocumentBuilderFactory;
import javax.xml.parsers.ParserConfigurationException;
import javax.xml.transform.Transformer;
import javax.xml.transform.TransformerException;
import javax.xml.transform.TransformerFactory;
import javax.xml.transform.dom.DOMSource;
import javax.xml.transform.stream.StreamResult;
import javax.xml.xpath.XPath;
import javax.xml.xpath.XPathConstants;
import javax.xml.xpath.XPathExpressionException;
import javax.xml.xpath.XPathFactory;
import org.w3c.dom.Document;
import org.w3c.dom.Element;
import org.w3c.dom.Node;
import org.w3c.dom.NodeList;
import org.xml.sax.InputSource;
import org.xml.sax.SAXException;

try{
DocumentBuilderFactory docBuilderFactory = DocumentBuilderFactory.newInstance();
		docBuilderFactory.setNamespaceAware(true);
        DocumentBuilder docBuilder;
docBuilder = docBuilderFactory.newDocumentBuilder();

   Document doc2 = docBuilder.parse( new InputSource(new StringReader(i)));
			    
				
				Element el = doc2.getDocumentElement();
			   
			XPath xpath = XPathFactory.newInstance().newXPath();
			
			String findHybridizationExpression = 
			"//*[local-name()='AbstractCaArrayEntity' and namespace-uri()='gme://External.caArray.caBIG/1.0/gov.nih.nci.caarray.external.sample']/@id";
			//id="URN:LSID:caarray.nci.nih.gov:gov.nih.nci.caarray.external.v1_0.sample.Hybridization:8388"
			NodeList  nodes = (NodeList) xpath.evaluate(findHybridizationExpression, el, XPathConstants.NODESET);
			System.out.println(nodes.getLength());
			
			StringBuffer cql = new StringBuffer("");
			for (int i=0;i");		
			}
			cql.append("");
			o = cql.toString();

			


		
		    	
		} catch (ParserConfigurationException e) {
			// TODO Auto-generated catch block
			e.printStackTrace();
		} catch (SAXException e) {
			// TODO Auto-generated catch block
			e.printStackTrace();
		} catch (IOException e) {
			// TODO Auto-generated catch block
			e.printStackTrace();
		} catch (XPathExpressionException e) {
			// TODO Auto-generated catch block
			e.printStackTrace();
		}

Wsdl

Wsdl Operation

Script

import java.io.*;
import java.util.ArrayList;
import java.util.List;
import java.util.zip.GZIPInputStream;
import javax.xml.parsers.DocumentBuilder;
import javax.xml.parsers.DocumentBuilderFactory;
import javax.xml.parsers.ParserConfigurationException;
import javax.xml.transform.Transformer;
import javax.xml.transform.TransformerException;
import javax.xml.transform.TransformerFactory;
import javax.xml.transform.dom.DOMSource;
import javax.xml.transform.stream.StreamResult;
import javax.xml.xpath.XPath;
import javax.xml.xpath.XPathConstants;
import javax.xml.xpath.XPathExpressionException;
import javax.xml.xpath.XPathFactory;
import org.w3c.dom.Document;
import org.w3c.dom.Element;
import org.w3c.dom.Node;
import org.w3c.dom.NodeList;
import org.xml.sax.InputSource;
import org.xml.sax.SAXException;
import java.util.zip.GZIPInputStream;

public  byte[] doubleArrayToBytes(double [][] doubles)
{
	if(null == doubles || 0 == doubles.length)
		return null;
	int numRows = doubles.length;
	int numColumns = doubles[0].length;
	ByteArrayOutputStream bos = new ByteArrayOutputStream();
	DataOutputStream dos = new DataOutputStream(bos);
	try
	{
		for(int i = 0; i < numRows; i++)
		{
			for(int j = 0; j < numColumns; j++)
				dos.writeDouble(doubles[i][j]);

		}

	}
	catch(IOException e)
	{
		e.printStackTrace(System.err);
		throw new RuntimeException((new StringBuilder()).append("Error converting double array to byte array: ").append(e).toString());
	}
	return bos.toByteArray();
}

public float [] getFloatArray(String columnString){	
	//trim the string
	columnString = columnString.trim();
	int columnSize = 0;
	for(int i=0;i");
	    trainingClassMembershipXMLString.append("DLBCLFL");
	    trainingClassMembershipXMLString.append(""+trainingType.length+"");
	    for(int i=0;i"+trainingType[i]+"");
	    }
	    for(int i=0;itrainingSample_"+i+"");
	    }
	    trainingClassMembershipXMLString.append("");
	    //System.out.println(trainingClassMembershipXMLString);
	    //test
	    StringBuffer testClassMembershipXMLString = new StringBuffer ("");
	    testClassMembershipXMLString.append("DLBCLFL");
	    testClassMembershipXMLString.append(""+testType.length+"");
	    for(int i=0;i"+testType[i]+"");
	    }
	    for(int i=0;itestSample_"+i+"");
	    }
	    testClassMembershipXMLString.append("");
	    //System.out.println(testClassMembershipXMLString);
	    
	     //construct Data elements
	    //training data-----------------------------------------------------------------
	    StringBuffer trainingDataXMLString = new StringBuffer ("");
	   // contains four :
	    // 1 add the base64value
	    trainingDataXMLString.append("data"
	    		+trainingMicroArrayData.length+","+trainingMicroArrayData[0].length+
	    		"datadouble"+
	    		trainingMicroArrayBase64String+ "");
	    //2 add markerNames
	    trainingDataXMLString.append("markerNames");
	    for(int i=0;imarkerNamesstringGene_"+i+"");
	    	
	    }
	    trainingDataXMLString.append("");
	      //3 add markerDescriptions
	    trainingDataXMLString.append("markerDescriptions");
	    for(int i=0;imarkerDescriptionsstringGene_"+i+"");    	
	    }
	    trainingDataXMLString.append("");
	    
	    
	    //4 add sampleNames
	    trainingDataXMLString.append("sampleNames");
	    for(int i=0;isampleNamesstringtrainingSample_"+i+"");    	
	    }
	    trainingDataXMLString.append("");	    
	    trainingDataXMLString.append("");
	   
	    //test data-----------------------------------------------------------------	 
	    StringBuffer testDataXMLString = new StringBuffer ("");
	    // contains four :
	    // 1 add the base64value
	    testDataXMLString.append("data"
		+testMicroArrayData.length+","+testMicroArrayData[0].length+
		"datadouble"+
		testMicroArrayBase64String+ "");
	    
	    //2 add markerNames
	    testDataXMLString.append("markerNames");
	    for(int i=0;imarkerNamesstringGene_"+i+"");
	    	}
	    testDataXMLString.append("");
	    //3 add markerDescriptions
	    testDataXMLString.append("markerDescriptions");
	    for(int i=0;imarkerDescriptionsstringGene_");
	    	testDataXMLString.append(i);
	    	testDataXMLString.append("");    	
	    }
	    testDataXMLString.append("");
	    //4 add sampleNames
	    testDataXMLString.append("sampleNames");
	    for(int i=0;isampleNamesstringtestSample_"+i+"");    	
	    }
	    testDataXMLString.append("");	    
	    testDataXMLString.append("");
	    //System.out.println(testDataXMLString);
		trainingClass = trainingClassMembershipXMLString.toString();
		testClass = testClassMembershipXMLString.toString();
   		trainingDataString = trainingDataXMLString.toString();
		testDataString = testDataXMLString.toString();
		
	} catch (IOException e) {
		// TODO Auto-generated catch block
		e.printStackTrace();
	} catch (XPathExpressionException e) {
		// TODO Auto-generated catch block
		e.printStackTrace();
	} catch (SAXException e) {
		// TODO Auto-generated catch block
		e.printStackTrace();
	} catch (ParserConfigurationException e) {
		// TODO Auto-generated catch block
		e.printStackTrace();
	}
				
			///////////////////////////////////////////////////