Workflow Entry: Triplify UniProt text search results [myexperiments:uniprotkb_search2rdf]
Created at: 30/11/09 @ 19:55:35
Last updated: 30/11/09 @ 19:56:33
Version 1
(of 1)
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Title:
Triplify UniProt text search results [myexperiments:uniprotkb_search2rdf]
Type:
Taverna 2
Preview
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Description
TAG: knowledgescope, uniprotkb, bio2rdf, search, rdf
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Workflow Components
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Authors (1)
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Titles (1)
| Triplify UniProt text search results [myexperiments:uniprotkb_search2rdf] |
![header=[] body=[These are the descriptions embedded within the workflow version] cssheader=[boxoverTooltipHeader] cssbody=[boxoverTooltipBody] delay=[200] Information](/images/famfamfam_silk/information.png?1202402239)
Descriptions (7)
| test values:
uniprot
hk1 |
| TAG: knowledgescope, uniprotkb, bio2rdf, search, rdf |
| test values:
namespace=uniprot
query=hk1
query=pdb4
query=paget disease |
| TAG: knowledgescope, uniprotkb, bio2rdf, search |
| test values:
namespace=uniprot
search=hk1 |
| test values:
namespace=uniprot
query=hk1
query=pdb4 |
|
Inputs (2)
| Name |
Description |
| query |
hk1
hexokinase
pdb4
paget disease
|
| uniprotkb_namespace |
uniprot
uniref
uniparc
citations
keywords
locations
taxonomy
uniprot
uniref
citations
|
Processors (6)
| Name |
Type |
Description |
| build_uniprot_search_url |
beanshell |
|
| Get_Web_Page_from_URL |
localworker |
|
| Split_string_into_string_list_by_regular_expression |
localworker |
|
| eol |
stringconstant |
|
| build_bmuri |
beanshell |
|
| build_ntriples |
beanshell |
|
Beanshells (3)
| Name |
Description |
Inputs |
Outputs |
| build_uniprot_search_url |
|
string1
string2
|
output
|
| build_bmuri |
|
string1
string2
|
output
|
| build_ntriples |
|
stringlist
namespace
search
|
count_ntriples
search_ntriples
|
Outputs (4)
| Name |
Description |
| bmuris |
|
| search_count_ntriples |
|
| uniprotkb_search_ntriples |
|
| url |
|
Datalinks (14)
| Source |
Sink |
| query |
build_uniprot_search_url:string2 |
| uniprotkb_namespace |
build_uniprot_search_url:string1 |
| build_uniprot_search_url:output |
Get_Web_Page_from_URL:url |
| Get_Web_Page_from_URL:contents |
Split_string_into_string_list_by_regular_expression:string |
| eol:value |
Split_string_into_string_list_by_regular_expression:regex |
| uniprotkb_namespace |
build_bmuri:string1 |
| Split_string_into_string_list_by_regular_expression:split |
build_bmuri:string2 |
| Split_string_into_string_list_by_regular_expression:split |
build_ntriples:stringlist |
| query |
build_ntriples:search |
| uniprotkb_namespace |
build_ntriples:namespace |
| build_bmuri:output |
bmuris |
| build_ntriples:count_ntriples |
search_count_ntriples |
| build_ntriples:search_ntriples |
uniprotkb_search_ntriples |
| build_uniprot_search_url:output |
url |
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