Workflow Entry: Triplify UniProt text search results from all databases [myexperiments:uniprotkb_search_all2rdf]

Created at: 30/11/09 @ 20:44:32 Last updated: 30/11/09 @ 20:45:08

Version 2 (latest) (of 2)

Version created on: 30/11/09 @ 20:44:32 by: Francois Belleau | Revision comments Expand

Last edited on: 30/11/09 @ 20:45:09 by: Francois Belleau

Title: Triplify UniProt text search results from all databases [myexperiments:uniprotkb_search_all2rdf]

Type: Taverna 2

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Search all UniProt databases using search URL service and merge results into a bmuri list and a ntriples string.

Option 1:

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http://www.myexperiment.org/workflows/985/download?version=2
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Authors (1)

Titles (2)

Descriptions (2)

Inputs (1)

Name	Description
query	hk1 hexokinase paget disease pdb4

Processors (6)

Beanshells (6)

Name	Inputs	Outputs
Count	in	out
build_uniprot_namespace_ntriple	namespace	ntriples
UniProt_provider		ntriples
build_uniprot_search_url	string1 string2	output
build_bmuri	string1 string2	output
build_ntriples	stringlist namespace search	count_ntriples search_ntriples

Outputs (4)

Name	Description
uniprotkb_search_all_ntriples
bmuris
search_count_ntriples
o1

Datalinks (10)

Source	Sink
query	UniProt_KB_text_search:query
Count:out	UniProt_KB_text_search:uniprotkb_namespace
UniProt_KB_text_search:uniprotkb_search_ntriples	Merge_String_List_to_a_String:stringlist
UniProt_KB_text_search:search_count_ntriples	Merge_String_List_to_a_String2:stringlist
UniProt_KB_text_search:bmuris	Flatten_List:inputlist
UniProt_KB_namespaces:namespace_list	Count:in
Merge_String_List_to_a_String:concatenated	uniprotkb_search_all_ntriples
Flatten_List:outputlist	bmuris
Merge_String_List_to_a_String2:concatenated	search_count_ntriples
UniProt_KB_text_search:search_count_ntriples	o1