Workflows

Kegg pathway diagrams (missing part 3) (2)

• Download

Find pathways in which all the genes in the list are involved. For each pathway draw the pathway diagram. Colour all enzyme boxes with colours specified. This workflow still has one problem. The list of colours have to be specified. I would like ideally to only except one background and one foreground colour and expand that to a list with length equivalent to the number of enzymes found - just duplicating the specified colours. However with almost no Taverna documentation to speak of, none of...

Created: 2010-03-19 | Last updated: 2010-03-19

Credits: Gregg Iceton

Kegg pathway diagrams (1)

• Download

Find pathways in which all the genes in the list are involved. For each pathway draw the pathway diagram.for each protein draw a diagram of the Kegg pathway that its protein is involved in and where available visualise the structures

Created: 2010-03-13

Credits: Jannetta

workflow1 (1)

• Download

blast dando o ID de uma proteinablast dando o ID de uma proteina ex: database is ‘SWISS’, for program, ‘blastp’, and for ID ‘1220173blast dando o ID de uma proteina ex: database is SWISS’, for program, blastp, and for ID 1220173

Created: 2009-11-16

Credits: Susaninha

myWorkflow (2)

• Download

asdasdasd

Created: 2009-06-09

Credits: Rob

get_enzymes_by_compound (1)

• Download

Retrieve all enzymes which have a link to a given compound id Input example: cpd:C00345

Created: 2008-10-08

Credits: Franck Tanoh

get_compounds_by_reaction (1)

• Download

Retrieve all compounds which have a link to a given reaction_id Example on input: rn:R00100

Created: 2008-10-07

Credits: Franck Tanoh

get_compounds_by_pathway (1)

• Download

Retrieves all compounds on the specified pathway Example of input: path:eco00020

Created: 2008-10-07

Credits: Franck Tanoh

get_best_best_neighbors_by_gene (1)

• Download

Search the best-best neighbor of a gene in all organisms. Example of input: gene_id: eco:b0002 offset: 1 limit: 10

Created: 2008-10-02

Credits: Franck Tanoh

btit (1)

• Download

Retrieve definitions of given database entries available on GenomeNet database. Example of input: hsa:1798 mmu:13478

Created: 2008-09-30 | Last updated: 2008-09-30

Credits: Franck Tanoh

binfo (1)

• Download

Show the version information of a specificied database.  Example of input: "gb"  for Genbank database "sp" for swissprot database "emb" for embl database

Created: 2008-09-30 | Last updated: 2008-09-30

Credits: Franck Tanoh