myExperiment - Workflows

Workflows

« Previous 1 2 Next »

Results per page:

Sort by:

Showing 13 results. Use the filters on the left and the search box below to refine the results.

Tag: ncbi

Wsdl: http://eutils.ncbi.nlm.nih.gov/entrez/eutils/soap/eutils.wsdl

or http://soap.genome.jp/KEGG.wsdl

or http://pubchem.ncbi.nlm.nih.gov/pug_soap/pug_soap.cgi?wsdl

or http://www.ncbi.nlm.nih.gov/entrez/eutils/soap/v2.0/eutils.wsdl

or http://www.chemspider.com/MassSpecAPI.asmx?WSDL

or http://www.chemspider.com/Search.asmx?WSDL

Remove all filters

Taverna 2

Uploader

Kalai

Download Structures from PubChem given che... (1)

Download

This workflow takes the input file containing chemical names and returns a single SDF file of structures. The names are searched against pubchem compounds via e-search. If the compound name is found an XML file containing PubChem ID is returned.The max return compound_ID is set to 1 which could be increased. If the compound name is not found then no ID is returned. The pubchem compound_ID is then used to download structures from PubChem.

Created: 2011-05-24 | Last updated: 2011-05-24

Credits: Kalai Michael Gerlich

Attributions: Download Entries from PubChem

Taverna 2

Uploader

Paul Fisher

Phenotype to pubmed (3)

Download

This workflow takes in a phenotype search term, and searches for abstracts in the PubMed database. These are passed to the eSearch function and searched for in PubMed. Those abstracts found are returned to the user