Workflows

Search filter terms
Filter by type
Filter by tag
Filter by user
Filter by licence
Filter by group
Filter by wsdl
Filter by curation
Results per page:
Sort by:
Showing 122 results. Use the filters on the left and the search box below to refine the results.
Type: Taverna 2 Licence: by-nd

Workflow MrBayesPPtest (13)

Thumb
robust connection

Created: 2013-12-11 | Last updated: 2014-11-27

Workflow ConsensusTree (15)

Thumb
robust interaction

Created: 2013-12-11 | Last updated: 2014-11-27

Workflow ConVergenceTreeDiagnosticGeoKS (15)

Thumb
robust interaction

Created: 2013-12-11 | Last updated: 2014-11-27

Workflow TreeVisualizationItol (11)

Thumb
robust interaction

Created: 2013-12-11 | Last updated: 2014-11-27

Workflow SelectingEvolutionaryModelWithPartFinder (19)

Thumb
BioVeL – Biodiversity Virtual e-Laboratory Workflow Documentation Name:Perform Short Bayesian Phylogenetic Inference Capacities Programme of Framework 7: EC e-Infrastructure Programme – e-Science Environments - INFRA-2011-1.2.1 Grant Agreement No: 283359 Project Co-ordinator: Mr Alex Hardisty Project Homepage: [http://www.biovel.eu][1] [1]: http://www.biovel.eu ## 1 Description The Pack contain 3 workflows that perform and validate bayesian phylogenetic i...

Created: 2013-12-11 | Last updated: 2014-12-01

Workflow XSTAR (3)

Thumb
This is a simple workflow designed to run XSTAR with an user selected input. XSTAR is a computer program for calculating the physical conditions and emission spectra of photoionized gases. More information can be found here: - XSTAR home page: http://heasarc.nasa.gov/lheasoft/xstar/xstar.html - XSTAR on the Spinet client (Soaplab2): http://caoba.ivic.ve:8180/soaplab2-axis/

Created: 2010-04-02 | Last updated: 2011-02-27

Uploader

Workflow Kegg pathway diagrams (3)

Thumb
Find pathways in which all the genes in the list are involved. For each pathway draw the pathway diagram.Find pathways in which all the genes in the list are involved. For each pathway draw the pathway diagram. Colour all enzyme boxes with colours specified. This workflow still has one problem. The list of colours have to be specified. I would like ideally to only except one background and one foreground colour and expand that to a list with length equivalent to the number of enzymes found - ...

Created: 2010-03-19 | Last updated: 2010-03-19

Workflow BlastandParse2 (1)

Thumb
This workflow allows you to configure a BioMart query to fetch sequences you want from Ensembl. These sequences are retrieved and a blast database of them is created (by default, in the directory you ran taverna from). Warning: This workflow assumes that you have blastall and formatdb installed on the machine, and that by default, these are both found or linked in /usr/local/bin. It also assumes that you have write permission to the directory you have run taverna from. The beanshells "creat...

Created: 2010-03-19

Credits: Network-member Baywatch Solutions

Attributions: Workflow fetchEnsemblSeqsAndBlast

Workflow BlastandParse1 (1)

Thumb
This workflow allows you to configure a BioMart query to fetch sequences you want from Ensembl. These sequences are retrieved and a blast database of them is created (by default, in the directory you ran taverna from). Warning: This workflow assumes that you have blastall and formatdb installed on the machine, and that by default, these are both found or linked in /usr/local/bin. It also assumes that you have write permission to the directory you have run taverna from. The beanshells "creat...

Created: 2010-03-19

Credits: Network-member Baywatch Solutions

Attributions: Workflow fetchEnsemblSeqsAndBlast

Uploader

Workflow KEGG pathway analysis (1)

Thumb
The KEGG pathway analysis of the workflow takes a list of UniProt accession numbers in any of the following formats with the following prefixes: External database Database prefix ----------------- --------------- NCBI GI ncbi-gi: NCBI GeneID ncbi-geneid: GenBank genbank: UniGene unigene: UniProt uniprot: It performs this using the web service bconv, provided by the KEGG database (Kanehisa et al., 2010), described in the KEGG API available at: http://www.genome.jp/kegg/docs/keggapi...

Created: 2010-03-19

Credits: Network-member Baywatch Solutions

Results per page:
Sort by: