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Functional annotation of SNPs using next-generation ...
Created: 2012-06-26 10:41:38 | Last updated: 2015-09-01 14:31:18
This pack implements the concept profile matching pipeline in the knowledge discovery tool Anni (http://biosemantics.org/anni), and adapts it to interpret the top SNPs from a GWAS. The underlying literature and concept profile databases are the same as the for the current version of Anni (2.1).
The pack consists of three main workflows (http://www.myexperiment.org/workflows/2999, http://www.myexperiment.org/workflows/2973, http://www.myexperiment.org/workflows/2972). Workflow 2999 returns a ...
12 items in this pack
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The workflow maps a SNP (dbSNP id) to a gene (EntrezGene id).
Author comments:
The window for gene inclusion can be set using the set_width parameter. This workflow can be used together with other workflows in this pack: http://www.myexperiment.org/packs/282 for functional gene and SNP annotation and knowledge discovery.
Created: 2012-06-26 | Last updated: 2013-03-11
Credits: Kristina Hettne Harish Dharuri
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