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Showing 32 results. Use the filters on the left and the search box below to refine the results.
User: Franck Tanoh

Workflow Get cities by country name (1)

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Get all the cities supported by the 'Get Weather info' workflow.... just enter your country name as input.

Created: 2008-02-15

Credits: User Franck Tanoh

Workflow Get weather information (1)

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Get the weather forcast of the day for you city. Info display: wind, visibility, temperature, sky conditions and pressure. The default value is my home town. To find out any supported city run the 'Get cities by country name' workflow

Created: 2008-02-15 | Last updated: 2008-02-15

Credits: User Franck Tanoh

Workflow get_enzymes_by_gene (1)

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Retrieve all the EC numbers which are assigned to a given gene Input example: eco:b0002

Created: 2008-10-08

Credits: User Franck Tanoh

Workflow bconv (1)

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Converts external IDs to KEGG IDs.External database:  NCBI GI, NCBI GeneID, GenBank , UniGene , OMIM. Database prefix: ncbi-gi:, ncbi-geneid:, genbank: ,unigene: , uniprot: , omim: Example of input parameter: ncbi-gi:10047090 ncbi-geneid:14751

Created: 2008-09-29 | Last updated: 2008-09-29

Credits: User Franck Tanoh

Uploader

Blob Taverna tutorial

Created: 2008-03-03 11:15:00 | Last updated: 2008-03-03 11:16:11

Credits: User Franck Tanoh User Katy Wolstencroft

License: Creative Commons Attribution-Share Alike 3.0 Unported License

A step by step guide on how to build workflows in Taverna.  Biology oriented but  should be ok with other background with a 'tiny'  Biology knowledge.  I welcome your comments and suggestions.

File type: PowerPoint presentation

Comments: 0 | Viewed: 205 times | Downloaded: 282 times

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Workflow get_elements_by_pathway (1)

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Retrieve all objects on specified pathway get_elements_by_pathway Input example: path:bsu00010

Created: 2008-10-08

Credits: User Franck Tanoh

Workflow get_element_relations_by_pathway (1)

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Retrieve all objects and relations on specified pathway Input example: path:bsu00010

Created: 2008-10-08

Credits: User Franck Tanoh

Workflow get_drugs_by_pathways (1)

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Retrieves all drugs on the specified pathway. input example: path:map07025 ; path:eco00020

Created: 2008-10-07

Credits: User Franck Tanoh

Workflow color_pathway_by_elements (2)

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Color the objects (rectangles and circles on a pathway map) corresponding to the given 'element_id_list' with the specified colors and return the URL of the colored image. Example of inputs: pathway_id: path:bsu00010 element_list: (to add as list) 78 79 fg_color_list:(to add as list) red blue bg_color_list: (to add as list) green yellow

Created: 2008-09-30 | Last updated: 2008-10-01

Credits: User Franck Tanoh

Workflow BLASTP with simplified results returned (1)

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Perform a blastp search on protein sequence and extract information based on the user input, e.g. a list of GI numbers.

Created: 2008-07-22 | Last updated: 2008-07-22

Credits: User Franck Tanoh

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