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Paul Fisher

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Pathway Term Enrichment Scores

Created: 2009-08-11 14:23:49

Credits: Paul Fisher

License: Creative Commons Attribution-Share Alike 3.0 Unported License

This file contains a list of each pathway identified from day 7 post infection and linked to the Tir1 QTL. With each pathway is a list of terms that are common to both pathway and phenotype corpora. These terms were ranked accoring to their enrichement scores. The higher the score, the more significant the term is in relation to correlating the pathway with the African trypanosomiasis resistance phenotype.

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abstracts
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african trypanosomiasis
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authors
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concept profile
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cosine vector space
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data-driven
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enrichment
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pubmed
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sleeping sickness
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term
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term extraction
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terms
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text
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text mining
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text mining; term extraction; entity recognition

Uploader

Paul Fisher

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Phenotype Concept Profile - Terms

Created: 2009-08-11 13:05:07 | Last updated: 2009-08-11 13:06:51

Credits: Paul Fisher

License: Creative Commons Attribution-Share Alike 3.0 Unported License

This file contains a list of all terms extracted from the phenotype corpus, relating to African trypanosomiasis resistance in the mouse model. These terms were extracted using the following service: http://gopubmed4.biotec.tu-dresden.de/GoPubMedTermGenerationService/services/GoPubMedTermGeneration?wsdl These terms represent the concept profile for the phenotype.

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Tags:

abstracts
|
african trypanosomiasis
|
authors
|
concept profile
|
cosine vector space
|
dresden
|
enrichment
|
entity recognition
|
gene
|
mining
|
mouse
|
protein
|
pubmed
|
sleeping sickness
|
term
|
term extraction
|
terms
|
text
|
text mining
|
text mining; term extraction; entity recognition

Uploader

Marco Roos

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Concept Profile of phenotype Chorea

Created: 2014-10-20 08:34:10

Credits: Marco Roos BioSemantics

License: Creative Commons Attribution-Share Alike 3.0 Unported License

Concept Profile generated from HPO term 'Chorea' via mapping to the corresponding UMLS phenotype concept.The profile contains ranked associations with Chorea conform mutual information content derived from co-occurrence in MedLine abstracts.Versions:HPO-UMLS mapping: Winnenburg, R., & Bodenreider, O. (2014). Coverage of Phenotypes in Standard Terminologies. In Proceedings of the ISMB’2014 SIG meeting “BioLINK.” Retrieved from http://phenoday2014.bio-lark.org/pdf/...

File type: application/vnd.openxmlformats-officedocument.spreadsheetml.sheet

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