Group: Bonn workshop 2012

Overview

This group is a shared space for material related to the "in silico experimentation using e-labs" at Bonn University, 3-5 Spetember 2012

Created at: Wednesday 29 August 2012 11:39:39 (UTC)

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  1. Avatar
    Mcornell joined the Bonn workshop 2012 group
    Wednesday 31 October 2012 11:54:16 (UTC)
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    Helen Hulme shared Agenda of Bonn tutorial
    This is the list of presentations and workshop items from the Bonn tutorial 2012. The presentations (and many of the workflows and datafiles) for this are in the pack: "Pack for Bonn2012" http://www.myexperiment.org/packs/330
    Friday 14 September 2012 09:51:22 (UTC)
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    Mcasfrox shared [untitled]
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    complete part one of assignment
    Wednesday 05 September 2012 12:11:17 (UTC)
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    Yoshiaki Ueda joined the Bonn workshop 2012 group
    Wednesday 05 September 2012 10:17:09 (UTC)
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    Katy Wolstencroft shared Workflow Assignment Instructions
    Wednesday 05 September 2012 08:20:34 (UTC)
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    Helen Hulme shared Assignment Data - suggested SNPs
     Here are some SNPs you can use for the assignment on day 3 of the Bonn 2012 Taverna course. The assignment is about SNP annotation and analysis If you would prefer to use some others that you are working with, fine. This data is a column of dbSNP identifiers  
    Wednesday 05 September 2012 07:20:29 (UTC)
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    Helen Hulme shared Bonn Taverna Presentation - Case Studies
     Presentation comparing and contrasting Taverna workbench use on two case studies: 1. African Sleeping Sickness (Trypanosomiasis) Wellcome Trust Project 2. NHS / TSB SNP annotation pipeline
    Tuesday 04 September 2012 10:17:41 (UTC)
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    Adhil, and Arif joined the Bonn workshop 2012 group
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    Katy Wolstencroft shared BiomartAndEMBOSSDisease
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    This workflow retrieves all genes on human chromosome 22 that are associated with a disease and aligns the upstream regions with mouse and rat homologues. The alignments are plotted and corresponding sequence ids are also returned. Using Biomart and EMBOSS soaplab services, This workflow retrieves a …
    Tuesday 04 September 2012 09:32:24 (UTC)
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    Immadi joined the Bonn workshop 2012 group
    Tuesday 04 September 2012 09:31:27 (UTC)
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    Katy Wolstencroft shared Bonn Tutorial REST services
    This is a brief introduction to using REST servicces through Taverna
    Monday 03 September 2012 19:34:12 (UTC)
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    Katy Wolstencroft shared Bonn Tutorial Different Service Types
    Thie tutorial introduces you to using different types of services with Taverna - e.g. asynchronous, biomart and soaplab
    Monday 03 September 2012 19:32:32 (UTC)

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