Group: A Team

Overview

 Team A from CSC8308, Newcastle University, 2011

Created at: Thursday 17 March 2011 12:16:21 (UTC)

Unique name: CSC8308_ATeam

Feed-icon

News


  1. Avatar
    Morgan Taschuk shared Parsed UniProt to PubMed
    Thumb
    Uses the parsed Uniprot results (see workflow http://www.myexperiment.org/workflows/26.html ) to retrieve information from PubMed.
    Friday 01 April 2011 12:51:20 (UTC)
  2. Avatar
    Morgan Taschuk shared Use UniProt to retrieve InterPro data
    Thumb
    Used parsed Uniprot results (see workflow Used parsed Uniprot results (see workflow http://www.myexperiment.org/workflows/26.html ) to retrieve results about the protein from InterPro.
    Friday 01 April 2011 12:50:25 (UTC)
  3. Avatar
    Morgan Taschuk shared UniProt to Gene Ontology
    Thumb
    Used parsed Uniprot results (see workflow http://www.myexperiment.org/workflows/26.html ) to retrieve results about the protein from Gene Ontology and outputs it in text format.
    Friday 01 April 2011 12:45:56 (UTC)
  4. Avatar
    Morgan Taschuk shared Print Protein Information to HTML
    Thumb
    Takes in a lot of parameters in order to construct an HTML table to display the information.
    Friday 01 April 2011 12:44:20 (UTC)
  5. Avatar
    Morgan Taschuk shared Vaccine Targets Workflow
    Thumb
    Comparison of the genome of Bacillus anthracis to closely related strains will allow the discovery of proteins which may be involved in pathogenicity. Based on the biochemical pathways where the protein interacts, vaccines can be designed for these unique proteins. By gaining insight into the biochem …
    Wednesday 30 March 2011 20:45:58 (UTC)
  6. Avatar
    Morgan Taschuk shared Drug Target FASTA
     The FASTA file containing the protein sequences of the drug targets from Ondex.
    Wednesday 30 March 2011 10:51:26 (UTC)
  7. Avatar
    Morgan Taschuk shared Compile Protein FASTA from Target to Drug file
    Thumb
    Uses a tab-delimited file with protein target and drug information (created in Ondex) to compile a protein FASTA file including each target.
    Wednesday 30 March 2011 10:34:40 (UTC)
  8. Avatar
    Morgan Taschuk shared Print Analysis Information to HTML
    Thumb
    Takes in a lot of parameters in order to construct an HTML header to display the information.
    Tuesday 29 March 2011 16:41:49 (UTC)
  9. Avatar
    Morgan Taschuk shared KEGG Pathways and Additional Information from BLAST
    Thumb
    Takes in a tab-delimited BLAST file and finds additional information about the target proteins from KEGG, Gene Ontology, Interpro and PubMed.
    Tuesday 29 March 2011 11:16:18 (UTC)
  10. Avatar
    Morgan Taschuk shared Threshold BLAST results
    Thumb
    Thresholds tab-delimited BLAST results to a certain percent identity.
    Monday 28 March 2011 11:57:56 (UTC)
  11. Avatar
    Morgan Taschuk shared Drug Re-Purposing Workflow
    Thumb
    The drug repurposing workflow system screens at least 20 bacterial proteomes against this set of proteins that are already being treated against using established drugs. By screening the bacterial proteomes it will be possible to find proteins of highly similar structure to those that are existing dr …
    Friday 25 March 2011 20:06:19 (UTC)
  12. Avatar
    Morgan Taschuk shared Extract unique proteins from blast results
    Thumb
    The workflow parses uses the tab-delimited BLAST results to determine the unique proteins found in the target genome that have no similarity to the source genome. The workflow parses uses the blast results to determine the unique proteins found in the target genome that have no similairty to the sour …
    Thursday 24 March 2011 19:49:46 (UTC)

4 members

16 shared items

This group has been credited 5 times

Information Tags (0)

None

Log in to add Tags

 
Members (4)
Credited by (5)

Note: some items may not be visible to you, due to viewing permissions.

Workflow

Workflow Vaccine Targets Workflow (3)

Thumb
Comparison of the genome of Bacillus anthracis to closely related strains will allow the discovery of proteins which may be involved in pathogenicity. Based on the biochemical pathways where the protein interacts, vaccines can be designed for these unique proteins. By gaining insight into the biochemical pathways that the unique proteins are involved in, the proteins can also be assessed for potential quality as vaccines. The key components of the vaccine finding system are the following: T...

Created: 2011-03-30 | Last updated: 2011-04-01

Credits: User Morgan Taschuk Network-member A Team

Workflow

Workflow Threshold BLAST results (2)

Thumb
Thresholds tab-delimited BLAST results to a certain percent identity.

Created: 2011-03-28 | Last updated: 2011-04-01

Credits: User Morgan Taschuk Network-member A Team

Workflow

Workflow Drug Re-Purposing Workflow (6)

Thumb
The drug repurposing workflow system screens at least 20 bacterial proteomes against this set of proteins that are already being treated against using established drugs. By screening the bacterial proteomes it will be possible to find proteins of highly similar structure to those that are existing drug protein targets and so this will infer that it is highly likely that the drugs can be used as antimicrobials against these proteins of highly similar structure. Proteomes that will be screene...

Created: 2011-03-25 | Last updated: 2011-04-01

Credits: User Morgan Taschuk Network-member A Team

Workflow

Workflow Extract unique proteins from blast results (4)

Thumb
The workflow parses uses the tab-delimited BLAST results to determine the unique proteins found in the target genome that have no similarity to the source genome.The workflow parses uses the blast results to determine the unique proteins found in the target genome that have no similairty to the source genome. Using these unique protein ids, and the original target protein fasta file, a fasta file of unique proteins is created.This workflow allows you to configure a BioMart query to fetch sequ...

Created: 2011-03-24 | Last updated: 2011-04-01

Credits: User Morgan Taschuk Network-member A Team

Attributions: Workflow Parse unique proteins from Blast file


What is this?

Linked Data

Non-Information Resource URI: https://www.myexperiment.org/groups/310


Alternative Formats

HTML
RDF
XML