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Creator
3791?size=60x60 Gb David De Roure
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Pack Presentation - From SALAMI to Social Machines


Created: 2012-10-02 09:34:13 | Last updated: 2012-10-02 15:11:23

Title: From SALAMI to Social Machines Speaker: David De Roure Event: Semantic Media kickoff meeting Event URL: http://semanticmedia.org.uk/?q=semantic_media_meeting_oct2012 Location: Barbican, London, UK Date: Tuesday, 2 October, 2012 Formats: .pptx

2 items in this pack

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Avatar Us Johnwcobb
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Pack Presentation - An interoperable data repositories ca...


Created: 2012-09-25 18:21:30 | Last updated: 2012-09-25 18:30:58

Title: An interoperable data repositories case study: DataONE Speaker: John W. Cobb Event: Hubbub 2012 Event URL: http://hubzero.org/hubbub Location: Indianapolis, US Date: Tuesday, September 24, 2012 Formats: .pptx

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3791?size=60x60 Gb David De Roure
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Pack Presentation - myExperiment and the Rise of Social M...


Created: 2012-09-24 19:04:20 | Last updated: 2012-10-12 20:08:43

Title: myExperiment and the Rise of Social Machines Speaker: David De Roure Event: Hubbub 2012 Event URL: http://hubzero.org/hubbub Location: Indianapolis, US Date: Tuesday, September 25, 2012 Formats: .pptx

3 items in this pack

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3424?size=60x60 De jhermes
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Pack Governmental Statements Analysis (Merkel)


Created: 2012-09-19 14:53:03 | Last updated: 2012-09-19 18:06:53

Workflow and required texts to perform the analysis of Merkels gs.

2 items in this pack

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1051?size=60x60 De Simon Fischer
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Pack Sudoku solving with RapidMiner (Who Wants to be a Da...


Created: 2012-09-04 16:56:44 | Last updated: 2012-09-04 16:58:26

A fun event at the annual RapidMiner conference RCOMM is the live data mining challenge "Who wants to be a data miner?" where contestants solve tasks data analysis tasks within a few minutes. In 2012 the task was to (partially) solve a Sudoku puzzle. Processes 1 to 3 in this pack correspond to the three tasks whereas process 0 loads the initial data and task 4 is a bonus process that solves the entire Sudoku. Make sure the processes are saved under the name they have on myExperimen...

5 items in this pack

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3791?size=60x60 Gb David De Roure
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Pack Presentation - Creating Research Objects that contai...


Created: 2012-08-24 16:48:46 | Last updated: 2012-08-24 16:54:54

Title: Creating Research Objects that contain collections of data, papers and research workflows Speaker: David De Roure Event: Creating Research Objects that contain collections of data, papers and research workflows Location: MSU, Bozeman, Montana Date: 24 August 2012 Formats: .pptx

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Pack A workflow approach to mine pathway databases provid...


Created: 2012-08-12 14:50:03 | Last updated: 2013-09-06 13:27:45

The pack contains workflows used to generate gene and snp sets for metabolites that were measured in the Illig et al publication. The workflows interrogate the Kegg and Biocyc pathway databases to find genes present in pathways and reactions relevant to a given metabolite.

5 items in this pack

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Creator
3400?size=60x60 Gb Khalid Belhajjame
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Pack Provenance of a Taverna and Vistrails workflows


Created: 2012-08-06 11:02:31 | Last updated: 2012-08-07 19:45:23

 This Packs contains the specification of a workflow that retrieves pathways given gene identifiers in both Taverna and Vistrails. The pack also contains provenance traces of those workflows.

5 items in this pack

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3791?size=60x60 Gb David De Roure
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Pack Long Tail Research and the Rise of Social Machines


Created: 2012-07-30 07:26:22 | Last updated: 2012-07-30 15:14:48

Word doc and PDF of blog post "Long Tail Research and the Rise of Social Machines" posted 27 July 2012 by David De Roure on http://www.scilogs.com/eresearch/social-machines/ This is a position piece for the "Big Data and Long Tails" workshop organised by the Institute for Computing in Science, July 29 2012, Park city, Utah.   

5 items in this pack

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3633?size=60x60 Gb Bamdad Dashtban
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Pack Task Data


Created: 2012-07-25 15:40:43 | Last updated: 2012-07-25 15:41:08

 Task Data 

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Creator
3791?size=60x60 Gb David De Roure
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Pack Presentation - Advances in Digital Scholarship


Created: 2012-07-25 10:29:46 | Last updated: 2012-07-25 13:12:21

Title: Advances in Digital Scholarship Speaker: David De Roure Event: DIGITAL RESEARCH RESOURCES IN THE ARTS AND HUMANITIES - Achievements and Prospects for Future Collaboration Location: King’s College London Date: 25 July 2012 Formats: .pptx

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Creator
3791?size=60x60 Gb David De Roure
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Pack Presentation - Web Observatories


Created: 2012-07-18 19:52:23 | Last updated: 2012-07-18 20:14:36

Title: Web Observatories Speaker: David De Roure Event: Web Observatory and Discovery Informatics workshop Event URL: http://research.microsoft.com/en-us/events/wodi2012/ Location: Microsoft, Redmond, WA Date: Wednesday July 18, 2012 Formats: .pptx

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Pack eScience-2012-Workflow Motifs-Submission-Dataset


Created: 2012-07-18 12:36:14 | Last updated: 2012-07-18 23:58:59

 The data sets that have been used for the manual analysis of motifs in Taverna-2 and Wings workflows.

3 items in this pack

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Creator
3791?size=60x60 Gb David De Roure
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Pack SALAMI Ground Truth stats


Created: 2012-07-17 17:43:32 | Last updated: 2012-07-17 17:46:46

Galaxy workflow to plot song durations and also a scatterplot of human annotation time versus song duration. Tested only on Galaxy main server.

3 items in this pack

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Creator
3400?size=60x60 Gb Khalid Belhajjame
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Pack Gene_To_Pathway using Taverna and Vistrails


Created: 2012-07-09 18:17:35 | Last updated: 2012-07-10 08:15:19

This pack contains a workflow that use Kegg web service to fetch the pathways that corresponds to a given gene id. The pack contains two versions of the workflow, one using the Taverna workbench and the second was designed using the Vistrails workflow system. As well as the workflows specifications, the pack contains the log of execution (in XML) of the Vistrails workflow and the provenance traces (in RDF) of the Taverna execution using the OPM and Janus formats.

5 items in this pack

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Creator
3791?size=60x60 Gb David De Roure
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Pack Presentation - Social Machines - Research on the Web


Created: 2012-07-04 10:58:58 | Last updated: 2012-07-04 11:31:28

Plenary talk at Digital Humanities Summer School, Merton College, Oxford, 4 July 2012

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Creator
3791?size=60x60 Gb David De Roure
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Pack Presentation - Social Machines - Three Shifts in Dig...


Created: 2012-06-28 08:45:11 | Last updated: 2012-06-28 09:00:27

Title: Social Machines - Three Shifts in Digital Scholarship Speaker: David De Roure Event: 6th Bloomsbury Conference Event URL: http://www.ucl.ac.uk/dis/conferences/2012 Location: UCL, London, UK Date: Thursday June 28, 2012 Formats: .pptx

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Creator
3791?size=60x60 Gb David De Roure
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Pack Presentation - Reconstructable Research


Created: 2012-06-18 15:03:43 | Last updated: 2012-06-18 15:09:54

Title: Reconstructable Research   Speaker: David De Roure   Event: SoundSoftware 2012: Workshop on Software and Data for Audio and Music Research   Event URL: http://soundsoftware.ac.uk/soundsoftware2012   Location: Queen Mary, London, UK   Date: Monday June 18, 2012   Formats: .pptx  

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Creator
3791?size=60x60 Gb David De Roure
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Pack Presentation - The Reality of Reproducibility of in ...


Created: 2012-06-16 13:34:35 | Last updated: 2012-06-28 09:43:48

Title: The Reality of Reproducibility of in silico Science Speaker: Carole Goble Event: JCDL 2012 Event URI: http://jcdl2012.info/ Location: Washington DC, USA Date: Tuesday, June 12, 2012 Formats: .ppt 

4 items in this pack

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Creator
3472?size=60x60 Ie Wotan
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Pack Trial Pack for UT UCD


Created: 2012-06-11 12:06:57 | Last updated: 2012-06-17 14:46:28

 This is a trial for usability testing.

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Pack ir


Created: 2012-06-08 03:28:32

ir

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Creator
3840?size=60x60 Hr Matej Mihelčić
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Pack Hybrid recommender RapidMiner and extension operators


Created: 2012-05-17 10:57:03 | Last updated: 2012-05-17 11:13:51

 This pack contains workflow and data for hybrid recommender that is created by combining Recommender extension and RapidMiner built in operators. 

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2615?size=60x60 Hr Ninoaf
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Pack Recommender system engine in RapidAnalytics


Created: 2012-05-11 12:54:44 | Last updated: 2012-06-20 14:47:43

 Here we provide four workflows that build the recommender engine by using the recommender extension. The Recommender Extension can be downloaded from the Rapid-I Marketplace from: http://rapidupdate.de:8180/UpdateServer/faces/product_details.xhtml?productId=rmx_irbrecommender . More details can be found: http://elico.rapid-i.com/recommender-extension.html      

9 items in this pack

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Creator
3791?size=60x60 Gb David De Roure
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Pack Presentation - Research on the Web: The Rise of New ...


Created: 2012-04-21 11:26:22 | Last updated: 2012-05-15 09:51:35

  Title: Research on the Web: The Rise of New Digital Scholarship Speaker: David De Roure Event: WEBIST 2012 Event URI: http://www.webist.org Location: Porto, Portugal Date: Saturday, April 21, 2012 Formats: .pptx    

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Creator
3840?size=60x60 Hr Matej Mihelčić
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Pack Online update experiment pack


Created: 2012-01-29 16:29:09 | Last updated: 2012-01-29 22:06:46

This is a pack containing experimentation workflows and datasets for item recommendation and rating prediction online update testing.

12 items in this pack

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1831?size=60x60 Pl Lawrynka
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Pack RMonto pack


Created: 2012-01-29 09:47:09 | Last updated: 2012-03-05 22:24:02

  RMonto is an ontological extension to RapidMiner, that provides possibility of machine learning with formal ontologies. RMonto is an easily extendable framework, currently providing support for unsupervised clustering with kernel methods and (frequent) pattern mining in knowledge bases. One important feature of RMonto is that it enables working directly on structured, relational data. Additionally, its custom algorithm implementations may be combined with the power of RapidMiner thr...

9 items in this pack

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Creator
3840?size=60x60 Hr Matej Mihelčić
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Pack Experimentation for recommender extension templates


Created: 2012-01-28 21:54:16 | Last updated: 2012-01-31 16:01:43

This is a recommender extension experimentation pack

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Pack document clustering


Created: 2012-01-17 11:16:46 | Last updated: 2012-02-15 16:05:57

example workflow for document clustering and evaluation

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3424?size=60x60 De jhermes
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Pack Structural methods on ciphers


Created: 2012-01-16 10:59:40 | Last updated: 2012-01-16 11:01:03

This is a pack of experiments (from my dissertation), where linguistic entities were determined within two ciphers (the Trithemian Polygraphia III and the Voynich Manuscript) using structural methods (minimal pair analysis, distributional measurements). Required text files supplied.

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3424?size=60x60 De jhermes
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Pack Comparative text statistics


Created: 2012-01-11 13:46:17 | Last updated: 2012-01-11 16:00:03

Three tesla experiments on text of different types, showing similarities between a PIII cipher and the VM code. Required texts supplied.

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Pack The current state of SKOS vocabularies on the Web


Created: 2011-12-12 14:55:33 | Last updated: 2011-12-12 19:12:51

 This pack contains files related to data and analysis of a survey on "The current state of SKOS vocabularies on the Web". A report was compiled discussing and submitted to the 9th Extended Semantic Web Conference (ESWC 2012).

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Creator
3791?size=60x60 Gb David De Roure
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Pack Presentation - Towards Computational Research Objects


Created: 2011-12-06 09:47:58 | Last updated: 2011-12-07 08:00:18

Title: Towards Computational Research Objects Speaker: David De Roure Event: Microsoft 2011 eScience Workshop Event URI: http://research.microsoft.com/en-us/events/escience2011/ Location: Stockholm, Sweden Date: 6 December 2011 Formats: .pptx 

3 items in this pack

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Creator
30?size=60x60 Nl Marco Roos
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Pack wf4ever Deliverable 6.3 Pack


Created: 2011-12-02 09:31:26 | Last updated: 2011-12-02 10:21:03

This pack contains (references to) the workflows for GWAS analysis by workflows that perform pathway and GO analysis and biosemantics data interpretation (a special form of text mining). This pack aggregates the deliverable materials for month 8 for Work Package 6. The workflows have not been published in the scientific domain yet, so its content cannot yet be made public. They are available upon request, in particular for reviewers. Please contact Kristina Hettne or Marco Roos (see credit...

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2602?size=60x60 Es Jose Enrique Ruiz
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Pack Propagation of properties extracted from the HyperLE...


Created: 2011-11-24 19:12:05 | Last updated: 2011-12-01 22:13:34

The scientific experiment represented by this research object pertains to the multi-wavelength study for a sample of the most isolated galaxies in the local universe. This study characterizes each galaxy of this sample through both the measurement of basic astrophysical properties: - The equatorial coordinates in J2000 epoch - The velocities in km/s (v) - The dust extinction coefficient (ag) - The axis ratio of the isophote 25 mag/arcsec2 (logr25) - The apparent total B magnitude (BT) ...

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3791?size=60x60 Gb David De Roure
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Pack Video - myExperiment demo at Microsoft


Created: 2011-11-23 03:30:47 | Last updated: 2011-11-23 04:15:52

Video of 10minute myExperiment demo by David De Roure at Microsoft "Transforming Scholarly Communication" event at Microsoft NERD, Cambridge, Mass, October 2011.

2 items in this pack

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Creator
3791?size=60x60 Gb David De Roure
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Pack Video - Country-Country demos


Created: 2011-11-23 03:24:46 | Last updated: 2011-11-23 05:58:06

NEMA project Country-Country video demos: Demo by Tim Crawford (Goldsmiths) with audio: "A Computational Musicologist using the Country/Country prototype" Screencast of Tech demo by Kevin Page, includes running Meandre flow on myExperiment and examples of SPARQL and RDF.  No audio. Slides from ISMIR 2011 tutorial "Practical Linked Data for MIR Researchers" by Kevon Page and David De Roure (makes use of Country/Country)

4 items in this pack

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Creator
3791?size=60x60 Gb David De Roure
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Pack Presentation - Towards Executable Research Objects


Created: 2011-11-09 15:50:08 | Last updated: 2011-11-09 15:51:34

Title: myExperiment: Towards Executable Research Objects  Speaker: David De Roure   Event: Elsevier Labs Online Lecture   Location: webex   Date: Tuesday, November 8, 2011x   Formats: .pptx and PDF

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Creator
1051?size=60x60 De Simon Fischer
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Pack RapidAnalytics Video Series Demo Processes


Created: 2011-11-02 15:02:21 | Last updated: 2011-11-02 18:00:41

This pack contains RapidMiner processes created for the RapidAnalytics Video Series.

3 items in this pack

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Creator
3791?size=60x60 Gb David De Roure
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Pack Presentation - Accelerating Scientists Knowledge Turns


Created: 2011-10-30 23:43:55 | Last updated: 2012-02-17 09:55:18

Title: Accelerating Scientists’ Knowledge Turns Speaker: Carole Goble Event: IC3K 2011 Event URI: http://www.ic3k.org/ Location: Paris, France Date: 26-29 October, 2011 Formats: .ppt

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3184?size=60x60 tpacurtis
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Pack Mapping Service Pack


Created: 2011-10-06 04:34:31 | Last updated: 2011-10-06 04:55:05

This pack includes the Mapping Service Workflow and a spreadsheet with supporting data.

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3175?size=60x60 Chrisser
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Pack Find elevation given city and country names


Created: 2011-10-06 03:06:32 | Last updated: 2011-10-06 04:15:33

This pack contains the workflows and supplemental files that I created for a project in IST600 - eScience and eResearch Workflows. This workflow accepts city and country names as user-supplied input. These value are supplied to the GetWeather webservice (http://www.webservicex.net/globalweather.asmx?WSDL), which returns an XML record of location and weather info for each recognized city. (See the uploaded photo "weather example") The XML returned from GetWeather is then searched u...

7 items in this pack

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3176?size=60x60 Us Trisha Adamus
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Pack Graphing and Citing Time Series Data


Created: 2011-10-05 15:28:19 | Last updated: 2011-10-05 16:02:12

This pack includes a worflow and its results.  The workflow extracts data from the Times Series Data Library and graphs it using Google charts.  The workflow also produces a citation for the date the data was accessed.

6 items in this pack

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3181?size=60x60 Us Kayleigh Ayn Bohémier
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Pack What's the Season?


Created: 2011-10-05 05:59:24 | Last updated: 2011-10-05 06:05:50

This pack contains the Excel file for What's the Season?, the workflow itself, and the inputs/outputs used for testing. The inputs/outputs are included in a .zip file. What's the Season? will take a list of astronomical objects and check them against an Excel file. The Excel file currently contains Messier objects with magnitudes less than 6.0 (common names unless the common name is ambiguous or nonexistent, and then it goes by Messier number). It also contains really bright stars. If none o...

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Pack Extract Gene Sequence Information with Kepler


Created: 2011-10-05 04:58:33 | Last updated: 2011-10-05 06:11:56

This workflow and pack were designed for a class project.  The Kepler based workflow allows one to extract specific information from a gene sequence by using the accession ID as input.  By using two web services created for the DNA Data Bank of Japan (DDBJ, http://www.xml.nig.ac.jp/wabi/Method?serviceName=DDBJ&mode=methodList&lang=en), one can extract the sequence header information as an output file, as well as retrieve the sequence, base pair count, and base pair ratios in...

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298?size=60x60 Us Andrea Wiggins
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Pack IST600 PS3 Inputs


Created: 2011-09-14 02:40:17 | Last updated: 2011-09-14 02:40:59

A pack of the inputs for PS3 in IST 600 at Syracuse University in Fall 2011.

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Pack test


Created: 2011-09-13 10:04:02

 test

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Creator
3230?size=60x60 Pl Piotr Hołubowicz
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Pack A sample pack


Created: 2011-08-22 10:42:16 | Last updated: 2011-08-22 10:43:06

All files and workflows.

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Creator
3791?size=60x60 Gb David De Roure
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Pack Presentation - The Execution of Dave 2.0


Created: 2011-08-17 13:07:06 | Last updated: 2011-08-17 13:17:43

Title: The Execution of Dave 2.0 Speaker: David De Roure   Event: Dagstuhl Seminar on the Future of Research Communication   Event URI: http://www.dagstuhl.de/de/programm/kalender/semhp/?semnr=11331   Location: Dagstuhl, Germany   Date: Wednesday, August 17, 2011   Formats: pptx pdf

3 items in this pack

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Creator
3791?size=60x60 Gb David De Roure
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Pack Scientific Social Objects


Created: 2011-08-14 23:54:47 | Last updated: 2011-08-14 23:58:12

Position paper submitted to the 1st International Workshop on Social Object Networks (SocialObjects 2011) 

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Creator
3791?size=60x60 Gb David De Roure
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Pack Towards the Preservation of Scientific Workflows


Created: 2011-08-12 23:18:58 | Last updated: 2011-08-12 23:25:32

 LaTeX source files for 4 page short paper submission to iPres 2011

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