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Creator
3791?size=60x60 Gb David De Roure
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Pack Presentation - From SALAMI to Social Machines


Created: 2012-10-02 09:34:13 | Last updated: 2012-10-02 15:11:23

Title: From SALAMI to Social Machines Speaker: David De Roure Event: Semantic Media kickoff meeting Event URL: http://semanticmedia.org.uk/?q=semantic_media_meeting_oct2012 Location: Barbican, London, UK Date: Tuesday, 2 October, 2012 Formats: .pptx

2 items in this pack

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Avatar Us Johnwcobb
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Pack Presentation - An interoperable data repositories ca...


Created: 2012-09-25 18:21:30 | Last updated: 2012-09-25 18:30:58

Title: An interoperable data repositories case study: DataONE Speaker: John W. Cobb Event: Hubbub 2012 Event URL: http://hubzero.org/hubbub Location: Indianapolis, US Date: Tuesday, September 24, 2012 Formats: .pptx

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3791?size=60x60 Gb David De Roure
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Pack Presentation - myExperiment and the Rise of Social M...


Created: 2012-09-24 19:04:20 | Last updated: 2012-10-12 20:08:43

Title: myExperiment and the Rise of Social Machines Speaker: David De Roure Event: Hubbub 2012 Event URL: http://hubzero.org/hubbub Location: Indianapolis, US Date: Tuesday, September 25, 2012 Formats: .pptx

3 items in this pack

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3424?size=60x60 De jhermes
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Pack Governmental Statements Analysis (Merkel)


Created: 2012-09-19 14:53:03 | Last updated: 2012-09-19 18:06:53

Workflow and required texts to perform the analysis of Merkels gs.

2 items in this pack

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1051?size=60x60 De Simon Fischer
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Pack Sudoku solving with RapidMiner (Who Wants to be a Da...


Created: 2012-09-04 16:56:44 | Last updated: 2012-09-04 16:58:26

A fun event at the annual RapidMiner conference RCOMM is the live data mining challenge "Who wants to be a data miner?" where contestants solve tasks data analysis tasks within a few minutes. In 2012 the task was to (partially) solve a Sudoku puzzle. Processes 1 to 3 in this pack correspond to the three tasks whereas process 0 loads the initial data and task 4 is a bonus process that solves the entire Sudoku. Make sure the processes are saved under the name they have on myExperimen...

5 items in this pack

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3791?size=60x60 Gb David De Roure
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Pack Presentation - Creating Research Objects that contai...


Created: 2012-08-24 16:48:46 | Last updated: 2012-08-24 16:54:54

Title: Creating Research Objects that contain collections of data, papers and research workflows Speaker: David De Roure Event: Creating Research Objects that contain collections of data, papers and research workflows Location: MSU, Bozeman, Montana Date: 24 August 2012 Formats: .pptx

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Pack A workflow approach to mine pathway databases provid...


Created: 2012-08-12 14:50:03 | Last updated: 2013-09-06 13:27:45

The pack contains workflows used to generate gene and snp sets for metabolites that were measured in the Illig et al publication. The workflows interrogate the Kegg and Biocyc pathway databases to find genes present in pathways and reactions relevant to a given metabolite.

5 items in this pack

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Creator
3400?size=60x60 Gb Khalid Belhajjame
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Pack Provenance of a Taverna and Vistrails workflows


Created: 2012-08-06 11:02:31 | Last updated: 2012-08-07 19:45:23

 This Packs contains the specification of a workflow that retrieves pathways given gene identifiers in both Taverna and Vistrails. The pack also contains provenance traces of those workflows.

5 items in this pack

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3791?size=60x60 Gb David De Roure
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Pack Long Tail Research and the Rise of Social Machines


Created: 2012-07-30 07:26:22 | Last updated: 2012-07-30 15:14:48

Word doc and PDF of blog post "Long Tail Research and the Rise of Social Machines" posted 27 July 2012 by David De Roure on http://www.scilogs.com/eresearch/social-machines/ This is a position piece for the "Big Data and Long Tails" workshop organised by the Institute for Computing in Science, July 29 2012, Park city, Utah.   

5 items in this pack

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3633?size=60x60 Gb Bamdad Dashtban
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Pack Task Data


Created: 2012-07-25 15:40:43 | Last updated: 2012-07-25 15:41:08

 Task Data 

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Creator
3791?size=60x60 Gb David De Roure
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Pack Presentation - Advances in Digital Scholarship


Created: 2012-07-25 10:29:46 | Last updated: 2012-07-25 13:12:21

Title: Advances in Digital Scholarship Speaker: David De Roure Event: DIGITAL RESEARCH RESOURCES IN THE ARTS AND HUMANITIES - Achievements and Prospects for Future Collaboration Location: King’s College London Date: 25 July 2012 Formats: .pptx

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Creator
3791?size=60x60 Gb David De Roure
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Pack Presentation - Web Observatories


Created: 2012-07-18 19:52:23 | Last updated: 2012-07-18 20:14:36

Title: Web Observatories Speaker: David De Roure Event: Web Observatory and Discovery Informatics workshop Event URL: http://research.microsoft.com/en-us/events/wodi2012/ Location: Microsoft, Redmond, WA Date: Wednesday July 18, 2012 Formats: .pptx

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Pack eScience-2012-Workflow Motifs-Submission-Dataset


Created: 2012-07-18 12:36:14 | Last updated: 2012-07-18 23:58:59

 The data sets that have been used for the manual analysis of motifs in Taverna-2 and Wings workflows.

3 items in this pack

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Creator
3791?size=60x60 Gb David De Roure
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Pack SALAMI Ground Truth stats


Created: 2012-07-17 17:43:32 | Last updated: 2012-07-17 17:46:46

Galaxy workflow to plot song durations and also a scatterplot of human annotation time versus song duration. Tested only on Galaxy main server.

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Creator
3400?size=60x60 Gb Khalid Belhajjame
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Pack Gene_To_Pathway using Taverna and Vistrails


Created: 2012-07-09 18:17:35 | Last updated: 2012-07-10 08:15:19

This pack contains a workflow that use Kegg web service to fetch the pathways that corresponds to a given gene id. The pack contains two versions of the workflow, one using the Taverna workbench and the second was designed using the Vistrails workflow system. As well as the workflows specifications, the pack contains the log of execution (in XML) of the Vistrails workflow and the provenance traces (in RDF) of the Taverna execution using the OPM and Janus formats.

5 items in this pack

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Creator
3791?size=60x60 Gb David De Roure
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Pack Presentation - Social Machines - Research on the Web


Created: 2012-07-04 10:58:58 | Last updated: 2012-07-04 11:31:28

Plenary talk at Digital Humanities Summer School, Merton College, Oxford, 4 July 2012

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Creator
3791?size=60x60 Gb David De Roure
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Pack Presentation - Social Machines - Three Shifts in Dig...


Created: 2012-06-28 08:45:11 | Last updated: 2012-06-28 09:00:27

Title: Social Machines - Three Shifts in Digital Scholarship Speaker: David De Roure Event: 6th Bloomsbury Conference Event URL: http://www.ucl.ac.uk/dis/conferences/2012 Location: UCL, London, UK Date: Thursday June 28, 2012 Formats: .pptx

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Creator
3791?size=60x60 Gb David De Roure
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Pack Presentation - Reconstructable Research


Created: 2012-06-18 15:03:43 | Last updated: 2012-06-18 15:09:54

Title: Reconstructable Research   Speaker: David De Roure   Event: SoundSoftware 2012: Workshop on Software and Data for Audio and Music Research   Event URL: http://soundsoftware.ac.uk/soundsoftware2012   Location: Queen Mary, London, UK   Date: Monday June 18, 2012   Formats: .pptx  

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Creator
3791?size=60x60 Gb David De Roure
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Pack Presentation - The Reality of Reproducibility of in ...


Created: 2012-06-16 13:34:35 | Last updated: 2012-06-28 09:43:48

Title: The Reality of Reproducibility of in silico Science Speaker: Carole Goble Event: JCDL 2012 Event URI: http://jcdl2012.info/ Location: Washington DC, USA Date: Tuesday, June 12, 2012 Formats: .ppt 

4 items in this pack

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3472?size=60x60 Ie Wotan
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Pack Trial Pack for UT UCD


Created: 2012-06-11 12:06:57 | Last updated: 2012-06-17 14:46:28

 This is a trial for usability testing.

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Pack ir


Created: 2012-06-08 03:28:32

ir

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Creator
3840?size=60x60 Hr Matej Mihelčić
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Pack Hybrid recommender RapidMiner and extension operators


Created: 2012-05-17 10:57:03 | Last updated: 2012-05-17 11:13:51

 This pack contains workflow and data for hybrid recommender that is created by combining Recommender extension and RapidMiner built in operators. 

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2615?size=60x60 Hr Ninoaf
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Pack Recommender system engine in RapidAnalytics


Created: 2012-05-11 12:54:44 | Last updated: 2012-06-20 14:47:43

 Here we provide four workflows that build the recommender engine by using the recommender extension. The Recommender Extension can be downloaded from the Rapid-I Marketplace from: http://rapidupdate.de:8180/UpdateServer/faces/product_details.xhtml?productId=rmx_irbrecommender . More details can be found: http://elico.rapid-i.com/recommender-extension.html      

9 items in this pack

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Creator
3791?size=60x60 Gb David De Roure
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Pack Presentation - Research on the Web: The Rise of New ...


Created: 2012-04-21 11:26:22 | Last updated: 2012-05-15 09:51:35

  Title: Research on the Web: The Rise of New Digital Scholarship Speaker: David De Roure Event: WEBIST 2012 Event URI: http://www.webist.org Location: Porto, Portugal Date: Saturday, April 21, 2012 Formats: .pptx    

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Creator
3840?size=60x60 Hr Matej Mihelčić
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Pack Online update experiment pack


Created: 2012-01-29 16:29:09 | Last updated: 2012-01-29 22:06:46

This is a pack containing experimentation workflows and datasets for item recommendation and rating prediction online update testing.

12 items in this pack

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1831?size=60x60 Pl Lawrynka
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Pack RMonto pack


Created: 2012-01-29 09:47:09 | Last updated: 2012-03-05 22:24:02

  RMonto is an ontological extension to RapidMiner, that provides possibility of machine learning with formal ontologies. RMonto is an easily extendable framework, currently providing support for unsupervised clustering with kernel methods and (frequent) pattern mining in knowledge bases. One important feature of RMonto is that it enables working directly on structured, relational data. Additionally, its custom algorithm implementations may be combined with the power of RapidMiner thr...

9 items in this pack

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Creator
3840?size=60x60 Hr Matej Mihelčić
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Pack Experimentation for recommender extension templates


Created: 2012-01-28 21:54:16 | Last updated: 2012-01-31 16:01:43

This is a recommender extension experimentation pack

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Pack document clustering


Created: 2012-01-17 11:16:46 | Last updated: 2012-02-15 16:05:57

example workflow for document clustering and evaluation

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3424?size=60x60 De jhermes
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Pack Structural methods on ciphers


Created: 2012-01-16 10:59:40 | Last updated: 2012-01-16 11:01:03

This is a pack of experiments (from my dissertation), where linguistic entities were determined within two ciphers (the Trithemian Polygraphia III and the Voynich Manuscript) using structural methods (minimal pair analysis, distributional measurements). Required text files supplied.

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3424?size=60x60 De jhermes
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Pack Comparative text statistics


Created: 2012-01-11 13:46:17 | Last updated: 2012-01-11 16:00:03

Three tesla experiments on text of different types, showing similarities between a PIII cipher and the VM code. Required texts supplied.

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Pack The current state of SKOS vocabularies on the Web


Created: 2011-12-12 14:55:33 | Last updated: 2011-12-12 19:12:51

 This pack contains files related to data and analysis of a survey on "The current state of SKOS vocabularies on the Web". A report was compiled discussing and submitted to the 9th Extended Semantic Web Conference (ESWC 2012).

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Creator
3791?size=60x60 Gb David De Roure
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Pack Presentation - Towards Computational Research Objects


Created: 2011-12-06 09:47:58 | Last updated: 2011-12-07 08:00:18

Title: Towards Computational Research Objects Speaker: David De Roure Event: Microsoft 2011 eScience Workshop Event URI: http://research.microsoft.com/en-us/events/escience2011/ Location: Stockholm, Sweden Date: 6 December 2011 Formats: .pptx 

3 items in this pack

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Creator
30?size=60x60 Nl Marco Roos
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Pack wf4ever Deliverable 6.3 Pack


Created: 2011-12-02 09:31:26 | Last updated: 2011-12-02 10:21:03

This pack contains (references to) the workflows for GWAS analysis by workflows that perform pathway and GO analysis and biosemantics data interpretation (a special form of text mining). This pack aggregates the deliverable materials for month 8 for Work Package 6. The workflows have not been published in the scientific domain yet, so its content cannot yet be made public. They are available upon request, in particular for reviewers. Please contact Kristina Hettne or Marco Roos (see credit...

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2602?size=60x60 Es Jose Enrique Ruiz
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Pack Propagation of properties extracted from the HyperLE...


Created: 2011-11-24 19:12:05 | Last updated: 2011-12-01 22:13:34

The scientific experiment represented by this research object pertains to the multi-wavelength study for a sample of the most isolated galaxies in the local universe. This study characterizes each galaxy of this sample through both the measurement of basic astrophysical properties: - The equatorial coordinates in J2000 epoch - The velocities in km/s (v) - The dust extinction coefficient (ag) - The axis ratio of the isophote 25 mag/arcsec2 (logr25) - The apparent total B magnitude (BT) ...

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3791?size=60x60 Gb David De Roure
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Pack Video - myExperiment demo at Microsoft


Created: 2011-11-23 03:30:47 | Last updated: 2011-11-23 04:15:52

Video of 10minute myExperiment demo by David De Roure at Microsoft "Transforming Scholarly Communication" event at Microsoft NERD, Cambridge, Mass, October 2011.

2 items in this pack

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Creator
3791?size=60x60 Gb David De Roure
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Pack Video - Country-Country demos


Created: 2011-11-23 03:24:46 | Last updated: 2011-11-23 05:58:06

NEMA project Country-Country video demos: Demo by Tim Crawford (Goldsmiths) with audio: "A Computational Musicologist using the Country/Country prototype" Screencast of Tech demo by Kevin Page, includes running Meandre flow on myExperiment and examples of SPARQL and RDF.  No audio. Slides from ISMIR 2011 tutorial "Practical Linked Data for MIR Researchers" by Kevon Page and David De Roure (makes use of Country/Country)

4 items in this pack

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Creator
3791?size=60x60 Gb David De Roure
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Pack Presentation - Towards Executable Research Objects


Created: 2011-11-09 15:50:08 | Last updated: 2011-11-09 15:51:34

Title: myExperiment: Towards Executable Research Objects  Speaker: David De Roure   Event: Elsevier Labs Online Lecture   Location: webex   Date: Tuesday, November 8, 2011x   Formats: .pptx and PDF

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1051?size=60x60 De Simon Fischer
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Pack RapidAnalytics Video Series Demo Processes


Created: 2011-11-02 15:02:21 | Last updated: 2011-11-02 18:00:41

This pack contains RapidMiner processes created for the RapidAnalytics Video Series.

3 items in this pack

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Creator
3791?size=60x60 Gb David De Roure
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Pack Presentation - Accelerating Scientists Knowledge Turns


Created: 2011-10-30 23:43:55 | Last updated: 2012-02-17 09:55:18

Title: Accelerating Scientists’ Knowledge Turns Speaker: Carole Goble Event: IC3K 2011 Event URI: http://www.ic3k.org/ Location: Paris, France Date: 26-29 October, 2011 Formats: .ppt

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3184?size=60x60 tpacurtis
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Pack Mapping Service Pack


Created: 2011-10-06 04:34:31 | Last updated: 2011-10-06 04:55:05

This pack includes the Mapping Service Workflow and a spreadsheet with supporting data.

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3175?size=60x60 Chrisser
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Pack Find elevation given city and country names


Created: 2011-10-06 03:06:32 | Last updated: 2011-10-06 04:15:33

This pack contains the workflows and supplemental files that I created for a project in IST600 - eScience and eResearch Workflows. This workflow accepts city and country names as user-supplied input. These value are supplied to the GetWeather webservice (http://www.webservicex.net/globalweather.asmx?WSDL), which returns an XML record of location and weather info for each recognized city. (See the uploaded photo "weather example") The XML returned from GetWeather is then searched u...

7 items in this pack

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3176?size=60x60 Us Trisha Adamus
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Pack Graphing and Citing Time Series Data


Created: 2011-10-05 15:28:19 | Last updated: 2011-10-05 16:02:12

This pack includes a worflow and its results.  The workflow extracts data from the Times Series Data Library and graphs it using Google charts.  The workflow also produces a citation for the date the data was accessed.

6 items in this pack

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3181?size=60x60 Us Kayleigh Ayn Bohémier
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Pack What's the Season?


Created: 2011-10-05 05:59:24 | Last updated: 2011-10-05 06:05:50

This pack contains the Excel file for What's the Season?, the workflow itself, and the inputs/outputs used for testing. The inputs/outputs are included in a .zip file. What's the Season? will take a list of astronomical objects and check them against an Excel file. The Excel file currently contains Messier objects with magnitudes less than 6.0 (common names unless the common name is ambiguous or nonexistent, and then it goes by Messier number). It also contains really bright stars. If none o...

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Pack Extract Gene Sequence Information with Kepler


Created: 2011-10-05 04:58:33 | Last updated: 2011-10-05 06:11:56

This workflow and pack were designed for a class project.  The Kepler based workflow allows one to extract specific information from a gene sequence by using the accession ID as input.  By using two web services created for the DNA Data Bank of Japan (DDBJ, http://www.xml.nig.ac.jp/wabi/Method?serviceName=DDBJ&mode=methodList&lang=en), one can extract the sequence header information as an output file, as well as retrieve the sequence, base pair count, and base pair ratios in...

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298?size=60x60 Us Andrea Wiggins
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Pack IST600 PS3 Inputs


Created: 2011-09-14 02:40:17 | Last updated: 2011-09-14 02:40:59

A pack of the inputs for PS3 in IST 600 at Syracuse University in Fall 2011.

5 items in this pack

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Pack test


Created: 2011-09-13 10:04:02

 test

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Creator
3230?size=60x60 Pl Piotr Hołubowicz
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Pack A sample pack


Created: 2011-08-22 10:42:16 | Last updated: 2011-08-22 10:43:06

All files and workflows.

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Creator
3791?size=60x60 Gb David De Roure
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Pack Presentation - The Execution of Dave 2.0


Created: 2011-08-17 13:07:06 | Last updated: 2011-08-17 13:17:43

Title: The Execution of Dave 2.0 Speaker: David De Roure   Event: Dagstuhl Seminar on the Future of Research Communication   Event URI: http://www.dagstuhl.de/de/programm/kalender/semhp/?semnr=11331   Location: Dagstuhl, Germany   Date: Wednesday, August 17, 2011   Formats: pptx pdf

3 items in this pack

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Creator
3791?size=60x60 Gb David De Roure
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Pack Scientific Social Objects


Created: 2011-08-14 23:54:47 | Last updated: 2011-08-14 23:58:12

Position paper submitted to the 1st International Workshop on Social Object Networks (SocialObjects 2011) 

2 items in this pack

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Creator
3791?size=60x60 Gb David De Roure
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Pack Towards the Preservation of Scientific Workflows


Created: 2011-08-12 23:18:58 | Last updated: 2011-08-12 23:25:32

 LaTeX source files for 4 page short paper submission to iPres 2011

7 items in this pack

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2862?size=60x60 Gb Liz Masterman
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Pack Rave in Context project - test pack


Created: 2011-08-08 14:13:04 | Last updated: 2011-11-10 16:07:29

Testing this pack

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3791?size=60x60 Gb David De Roure
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Pack Presentation - Web Services in the Scientific Wilds


Created: 2011-07-12 22:35:26 | Last updated: 2011-07-12 23:18:41

Title: Web Services in the Scientific Wilds Speaker: Carole Goble Event IEEE CLOUD/ICWS/SCC/SERVICES 2011 Event URL: http://conferences.computer.org/scc/2011/ Location: Washington DC, USA Date: Friday July 8, 2011 Formats: .ppt

3 items in this pack

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Creator
2485?size=60x60 Gb Rafael C. Jimenez
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Pack Proteomics Bioinformatics Workshop 2011


Created: 2011-07-07 13:20:57 | Last updated: 2011-07-19 12:27:12

Example of workflows using proteomics resources for the Proteomics Bioinformatics Workshop 2011 organized by the Wellcome Trust

8 items in this pack

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Creator
3222?size=60x60 Gb Sean Bechhofer
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Pack Presentation: Research Objects: Towards Exchange and...


Created: 2011-07-05 13:56:15 | Last updated: 2011-07-05 14:05:05

Title:  Research Objects: Towards Exchange and Reuse of Digital Knowledge Speaker:  Sean Bechhofer Event:  CERN Workshop on Innovations in Scholarly Communication (OAI7) Event URL:  http://indico.cern.ch/conferenceDisplay.py?confId=103325 Location:  Geneva, CH Date:  Wednesday 22nd June 2011

3 items in this pack

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3791?size=60x60 Gb David De Roure
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Pack Presentation - Machines, Methods and Music - On the ...


Created: 2011-07-05 13:42:43 | Last updated: 2011-07-05 13:48:41

Title: Machines, Methods and Music - On the Evolution of e-Research Speaker: David De Roure Event: The 2011 International Conference on High Performance Computing & Simulation (HPCS 2011) Event URL: http://hpcs11.cisedu.info/ Location: Istanbul, Turkey Date: Tuesday 5th July 2011 Formats: .pptx

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3791?size=60x60 Gb David De Roure
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Pack Presentation - Co-evolution of digital technologies ...


Created: 2011-06-30 17:21:23 | Last updated: 2011-06-30 23:33:04

Title: Co-evolution of digital technologies and research methods Speaker: David De Roure Event: Fifth Bloomsbury Conference on E-Publishing and e-Publications Event URL: http://www.ucl.ac.uk/infostudies/e-publishing/ Location: UCL, London, UK Date: Thursday 30 June 2011 Formats: .pptx Abstract: e-Science has brought advanced technologies to multiple disciplines, first to early adopters, and then with broader uptake we are seeing new digital method...

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1505?size=60x60 Gb James Eales
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Pack Creating a focused corpus of factual outcomes from b...


Created: 2011-06-28 11:19:04 | Last updated: 2011-12-13 16:02:16

 This pack contains resources and supplementary files for the submission to the MIND2011 workshop titled "Creating a focused corpus of factual outcomes from biomedical experiments" by James Eales, George Demetriou and Robert Stevens

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2929?size=60x60 Gb Skerrien
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Pack APO-SYS Toolbox


Created: 2011-06-10 14:24:10 | Last updated: 2011-06-10 15:11:25

 A collection of workflows and tools to build analysis pipeline, developed primarily for APO-SYS project members.

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1505?size=60x60 Gb James Eales
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Pack RapidMiner plugin for Taverna videos and descriptions


Created: 2011-06-06 10:17:52 | Last updated: 2011-12-13 16:02:04

 This pack contains videos the show how to use various parts of the RapidMiner plugin for Taverna. The videos demonstrate how to build a Taverna workflow which collects a GEO dataset, uploads it to RapidAnalytics, trains a classifier on one half of the data and tests it on the other half. This classification process can be used to gauge how well mutant and control assays agree across experimental repeats.

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3947?size=60x60 Gb Don Cruickshank
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Pack Test pack for relationships


Created: 2011-06-03 12:48:10 | Last updated: 2013-01-10 09:00:32

This is a pack that I use to demonstrate that you can add relationships between pack items.

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3791?size=60x60 Gb David De Roure
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Pack Presentation - The Multiple Networks of myExperiment


Created: 2011-05-24 07:16:54 | Last updated: 2011-05-24 07:22:08

Title: The Multiple Networks of myExperiment Speaker: David De Roure Event: CCGrid 2011 Social Networks Workshop   Event URL: http://www.ksri.kit.edu/Default.aspx?PageId=800&lang=de   Location: Newport Beach, CA, US   Date: Monday, May 23, 2011   Formats: ..pptx

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Avatar Ch Adam Woznica
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Pack Data mining on KUP data


Created: 2011-05-23 12:35:37 | Last updated: 2011-05-24 12:31:58

Various Rapid Miner workflows and R scripts that analyse and visualize KUP-related data extracted from the KUP knowledge base.

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2820?size=60x60 Gb Kalai
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Pack Natural product likeness filter


Created: 2011-05-13 19:35:39 | Last updated: 2011-08-29 14:25:47

Reference: Natural Product-likeness Score and Its Application for Prioritization of Compound Libraries Peter Ertl,* Silvio Roggo, and Ansgar Schuffenhauer Novartis Institutes for BioMedical Research, CH-4002 Basel, Switzerland http://peter-ertl.com/reprints/Ertl-JCIM-48-68-2008.pdf    The natural product likeness scorer implemented by Peter Ertl was originally devised to screen large compound libraries for natural product likeness in drug designing studies. His work...

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1505?size=60x60 Gb James Eales
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Pack Article title classification: kidney factomics


Created: 2011-04-21 15:20:20 | Last updated: 2011-12-13 16:02:52

 This pack contains files relevant to our work on extracting facts from article titles

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Pack This is Will's test pack


Created: 2011-03-08 04:31:38 | Last updated: 2011-03-08 04:31:39

This is a test.

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469?size=60x60 Gb Paolo
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Pack Taverna-eScience Central integration demo


Created: 2011-02-25 08:59:23 | Last updated: 2011-02-25 09:06:48

 Taverna workflow with embedded eSC workflow.  See here for documentation on how to make this work

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4399?size=60x60 Gb Paul Fisher
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Pack Trichuriasis induced Colitis


Created: 2011-02-16 12:49:21 | Last updated: 2011-02-16 15:26:36

This pack contains the workflows and data relating to Trichuriasis induced colitis.

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Pack LOLUWT


Created: 2011-02-10 07:45:27

 ahha

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3791?size=60x60 Gb David De Roure
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Pack Presentation - myExperiment Architecture


Created: 2011-02-06 14:43:39 | Last updated: 2011-02-06 18:32:37

Title: myExperiment Architecture  Speaker: David De Roure   Event: Wf4Ever Architecture Task Force First Face to Face Meeting   Event URL: http://www.wf4ever-project.org/   Location: Oxford UK   Date: Monday February 7, 2011   Formats: .ppt

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1217?size=60x60 Gb Alan Williams
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Pack Example R workflows


Created: 2010-12-13 10:44:04 | Last updated: 2010-12-13 16:28:58

Small workflows illustrating how R can be used within Taverna services

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3791?size=60x60 Gb David De Roure
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Pack Presentation - Why Linked Data is Not Enough for Sci...


Created: 2010-12-09 22:18:43 | Last updated: 2010-12-10 01:58:30

Title: Why Linked Data is Not Enough for Scientists Speaker: David De Roure Event: Sixth IEEE e–Science Conference Event URI: http://www.escience2010.org Location: Brisbane, Australia Date: Friday, December 10, 2010 Formats: .ppt

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3791?size=60x60 Gb David De Roure
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Pack Presentation - The Evolution of myExperiment


Created: 2010-12-09 05:11:17 | Last updated: 2010-12-09 05:49:11

Title: The Evolution of myExperiment Speaker: David De Roure Event: Sixth IEEE e–Science Conference Event URI: http://www.escience2010.org Location: Brisbane, Australia Date: Thursday, December 9, 2010 Formats: .ppt and .pptx  

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4399?size=60x60 Gb Paul Fisher
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Pack Text Mining Workflows


Created: 2010-12-08 11:55:03 | Last updated: 2011-02-01 11:33:11

This pack contains workflows to navigate from candidate Quantitative Trait genes and pathways to a given phenotype.

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3791?size=60x60 Gb David De Roure
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Pack wf4ever slides


Created: 2010-12-02 09:52:26 | Last updated: 2010-12-02 10:16:34

 Slides for wf4ever kickoff meeting

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2700?size=60x60 Au Gavin Kennedy
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Pack My Pack


Created: 2010-11-23 05:04:05 | Last updated: 2010-11-23 05:04:06

This is my first pack

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Pack grid


Created: 2010-11-16 07:04:22

grid computing

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3791?size=60x60 Gb David De Roure
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Pack Presentation - The Evolution of e-Research: Machines...


Created: 2010-10-28 07:09:43 | Last updated: 2010-10-29 01:20:15

Title: The Evolution of e-Research: Machines, Methods and Music Speaker: David De Roure Event: Oxford e-Research Centre Open Day 2010 Event URL: http://www.oerc.ox.ac.uk/events/ddr-inaugural Location: Oxford, UK Date: Thursday October 28, 2010 Formats: .ppt and .pptx

3 items in this pack

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3791?size=60x60 Gb David De Roure
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Pack Presentation - Collaboration and Sharing of Computat...


Created: 2010-10-21 20:16:46 | Last updated: 2010-10-21 20:19:25

Title: Collaboration and Sharing Computational Research Methods Speaker: Carole Goble Event: JISC Future of Research Conference 2010 Event URL: http://jiscres10.jiscinvolve.org/wp/ Location: Congress Centre, London Date: Tuesday October 19, 2010 Formats: .ppt

3 items in this pack

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1854?size=60x60 De Rapido
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Pack Compare SVM, Linear Regression, Linear Discriminant ...


Created: 2010-10-21 16:56:37 | Last updated: 2010-10-21 18:20:19

Compare SVM, Linear Regression, Linear Discriminant Analysis with AUC as Performance

3 items in this pack

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3791?size=60x60 Gb David De Roure
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Pack Presentation - MyExperimentalScience, extending the ...


Created: 2010-10-17 15:54:22 | Last updated: 2010-10-17 15:56:54

Title: MyExperimentalScience, extending the "workflow" Speaker: Jeremy Frey Event: Microsoft eScience Workshop 2010 Event URL: http://research.microsoft.com/en-us/events/escience2010/ Location: Berkeley, California Date: Tuesday October 12, 2010 Formats: .ppt and .pptx

2 items in this pack

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3791?size=60x60 Gb David De Roure
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Pack Presentation - Data Intensive Research in Computati...


Created: 2010-10-17 15:49:17 | Last updated: 2010-10-17 16:07:51

Title: Data Intensive Research in Computational Musicology Speaker: David De Roure Event: Microsoft eScience Workshop 2010 Event URL: http://research.microsoft.com/en-us/events/escience2010/ Location: Berkeley, California Date: Tuesday October 12, 2010 Formats: .ppt and .pptx

2 items in this pack

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3791?size=60x60 Gb David De Roure
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Pack Why Linked Data is Not Enough for Scientists


Created: 2010-10-08 14:52:36 | Last updated: 2010-12-09 22:20:39

Abstract—Scientific data stands to represent a significant portion of the linked open data cloud and science itself stands to benefit from the data fusion capability that this will afford. However, simply publishing linked data into the cloud does not necessarily meet the requirements of reuse. Publishing has requirements of provenance, quality, credit, attribution, methods in order to provide the reproducibility that allows validation of results. In t...

6 items in this pack

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3791?size=60x60 Gb David De Roure
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Pack Presentation - Glimpses of future research practice:...


Created: 2010-10-07 02:28:52 | Last updated: 2010-10-07 06:39:13

Title: Glimpses of future research practice: a musical study   Speaker: David De Roure   Event: e-Research Roundtable, Graduate School of Library and Information Science (GSLIS), University of Illinois at Urbana-Champaign    Event URL:    Location: University of Illinois at Urbana-Champaign, Illinois, USA   Date: Wednesday, October 6, 2010   Formats: .ppt and .pptx

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3791?size=60x60 Gb David De Roure
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Pack Presentation - The Long Tail Scientist


Created: 2010-09-17 23:43:02 | Last updated: 2010-09-18 15:10:30

Title: The Long Tail Scientist Speaker: Carole Goble Event: UK e-Science All Hands Meeting 2010 Event URL: http://www.allhands.org.uk/events/all-hands-meeting-2010 Location: Cardiff, UK Date: Thursday, September 17, 2010 Formats: .ppt

2 items in this pack

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3791?size=60x60 Gb David De Roure
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Pack Papers authored by David De Roure in DBLP


Created: 2010-09-08 14:33:48 | Last updated: 2010-09-08 15:02:07

This pack contains my papers listed in DBLP at 2010-09-07. The individual pack items are resources which begin http://dblp.l3s.de/d2r/resource/publications/ For a list on the DBLP site itself use the search http://www.informatik.uni-trier.de/~ley/db/indices/a-tree/r/Roure:David_De.html

124 items in this pack

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3791?size=60x60 Gb David De Roure
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Pack Example Pack of 50 Papers authored by David De Roure...


Created: 2010-09-08 08:08:55 | Last updated: 2010-09-08 14:46:48

This pack contains an arbitrary selection of 50 of my papers listed in DBLP at 2010-09-07. The individual pack items are resources which begin http://dblp.l3s.de/d2r/resource/publications/ This pack is provided for demonstration purposes.  A complete pack with all my DBLP publications can be found in Pack 144 or http://www.myexperiment.org/packs/144.  For a list on the DBLP site itself use the search http://www.informatik.uni-trier.de/~ley/db/indices/a-tree/r/Roure:Davi...

50 items in this pack

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3791?size=60x60 Gb David De Roure
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Pack all myExperiment team papers


Created: 2010-09-07 23:54:56 | Last updated: 2010-09-08 00:38:03

Preprints of myExperiment papers on the EPrints server http://eprints.ecs.soton.ac.uk/

23 items in this pack

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3791?size=60x60 Gb David De Roure
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Pack Presentation - The Evolution of e-Research


Created: 2010-08-24 10:11:36 | Last updated: 2010-08-25 08:10:36

Title: The Evolution of e-Research Speaker: David De Roure Event: e-Research eXPO2010 Event URI:http://www.monash.edu.au/eresearch/events/e-xpo/2010/ Location: Monash, Australia Date: Wednesday, August 25, 2010 Formats: .ppt and .ppt

3 items in this pack

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3791?size=60x60 Gb David De Roure
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Pack Presentation - Integrating, Representing and Reasoni...


Created: 2010-08-10 13:48:11 | Last updated: 2010-08-10 13:50:31

 Title: Integrating, Representing and Reasoning over Human Knowledge in myExperiment Speaker: David De Roure Event: IEEE e-Science 2009 Event URL: http://www.icis.anl.gov/programs/summer-4 Location: Snowbird, Utah, US Date: Tuesday August 10, 2010 Formats: .ppt  

1 item in this pack

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254?size=60x60 Cn Peter Li
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Pack Example PubChem, ChEBI and ChemSpider workflows


Created: 2010-07-23 11:13:09 | Last updated: 2010-07-23 11:21:05

This pack contains example pipelines showing how the PubChem, ChEBI and ChemSpider web services can be called from Taverna workflows. Descriptions of the operations found in the PubChem, ChEBI and ChemSpider web services are available at http://www.taverna.org.uk/introduction/related-projects/chemtaverna/chemistry-web-services. 

40 items in this pack

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4011?size=60x60 Gb Alex Nenadic
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Pack Chemistry Web service set


Created: 2010-07-20 13:16:40 | Last updated: 2010-09-07 09:31:40

Chemistry service set contains a set of Web services for chemistry provided by ChemSpider, ChEBI and PubChem. Services' descriptions and example workflows can be found at: http://www.taverna.org.uk/introduction/related-projects/chemtaverna/chemistry-web-services/ You can add this set of services to the list of available services in the Service Panel in the Taverna Workbench by right clicking on "Available Services" and selecting "Import services". The service set...

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25?size=60x60 England David Withers
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Pack Spreadsheet Import Service Example


Created: 2010-07-13 11:27:55 | Last updated: 2010-07-13 11:37:14

 Example workflow showing how to use the SpreadsheetImport service

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1253?size=60x60 Gb Anja Le Blanc
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Pack ICS Use Case Solutions


Created: 2010-07-12 13:54:16 | Last updated: 2010-07-13 10:57:46

Workflows and result sets of the ICS use cases: Find the instruments (in each case) that are capable of making: in-situ observations in-situ magnetic field observations images in soft X-rays (sxr) and (logical or) extreme ultra violet (euv) ground-based coronagraph observations in-situ observation near Mars

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4011?size=60x60 Gb Alex Nenadic
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Pack NCBI Entrez Utilities Web service set


Created: 2010-07-06 14:17:35 | Last updated: 2010-07-22 13:17:33

NCBI Entrez Utilities Web service set provides access to EGQuery, ESummary, EInfo, ELink, ESearch, ESpell, EPost and EFetch utilities. Services' descriptions can be found at the NCBI's Web site at: http://www.ncbi.nlm.nih.gov/entrez/query/static/esoap_help.html You can add this set of services to the list of available services in the Service Panel in the Taverna Workbench by right clicking on "Available Services" and selecting "Import services". The service set can eith...

2 items in this pack

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3791?size=60x60 Gb David De Roure
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Pack Presentation - Repositories and Linked Open Data: th...


Created: 2010-07-06 08:05:27 | Last updated: 2010-07-06 11:41:18

Title: Repositories and Linked Open Data: the view from myExperiment Speaker: David De Roure Event: Open Repositories 2010 Event URL: http://or2010.fecyt.es/ Location: Madrid, Spain Date: Tuesday July 6, 2010 Formats: .pptx

2 items in this pack

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Pack test


Created: 2010-06-22 14:27:37 | Last updated: 2010-08-18 16:46:31

 jnkj k k k k k 

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469?size=60x60 Gb Paolo
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Pack PC1 mockup part A


Created: 2010-06-21 09:42:44 | Last updated: 2010-06-21 16:17:25

part 1 of 2 for the PC1 workflow -- mockup version. Includes OPM graph in RDF and XML

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Pack comad biomoby demo workflow


Created: 2010-06-15 19:48:35 | Last updated: 2010-06-15 19:48:51

It contains workflows to implement some biological analysis function by accessing the BioMoby service. The configurability of the comad actor is demonstrated. Thousands of BioMoby services could be modeled by one comad actor.

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Pack comad simple demo workflow


Created: 2010-06-15 19:40:19 | Last updated: 2010-06-15 19:41:35

It contains a group of simple workflows to show various basic concepts of comad, including how to build your first comad workflow, how to use the composite coactor, creation, port reference and deletion (filter) syntax in comad path expression, and how to use user defined type and type alias.

8 items in this pack

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Pack comad comet demo workflow


Created: 2010-06-15 18:31:20 | Last updated: 2010-06-15 19:23:27

It contains workflows to demonstrate  the neat linear workflow structure got from comad. And the streaming mode and high adaptability (reusability) of the actor to the workflow with different data structure are also showed.

4 items in this pack

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