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BioExcel

Unique name: bioexcel
Created: Monday 17 October 2016 17:14:13 (UTC)

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Gilbertcntranw

Joined: Wednesday 02 February 2011 18:38:09 (UTC)

Last active:Monday 14 March 2011 01:37:58 (UTC)

Email (public):gilbertcntranw [at] gmail.com

Field/Industry:non profit consulting | Occupation/Role(s):Research Assistant

Renaissance texts parameters (1)

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Calculation of some basic parameters of renaissance texts written in different languages. Parameters: type count, token count, type token ratio, wordlength, entropy, conditional entropy, coincidence values, random walk values, repeated words and minimal pairs. Texts (from project Guttenberg, referenced in http://www.myexperiment.org/files/660.html): Dee (en), dante (it), descartes (lat), ceasar (anc lat), paracelsus (ger), melanchton (ger)

Created: 2012-01-11 | Last updated: 2012-01-11

Credits: jhermes

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Einstein and Mythology : The Lengthier the Relations...

Created: 2009-07-19 03:45:35

Credits: M. Kirsh

License: Creative Commons Attribution-Noncommercial-No Derivative Works 3.0 Unported License

File type: Adobe PDF

Comments: 0 | Viewed: 53 times | Downloaded: 9 times

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DatabaseID to ConceptID (7)

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Purpose: This workflow maps input Identifiers, common database identifiers, to the Concept Identifiers from the EMC ontology. Result: Concept Identifiers from the EMC ontology. Comments: Database: one of CAS, DRUG, etc. The supported databases are listed below (database, description, example). CAS, Chemical Abstracts Service registry number, 64-17-5. DRUG, Drug Bank, DB00316. AF, Affymetrix, 200007_at. CHEB, ChEBI, 16236. CHID, ChemIDplus, 0000050000. EG, Entrez-Gene, 3064. GO, Gene Ontol...

Created: 2012-06-25 | Last updated: 2014-07-14

Credits: Marco Roos Martijn Schuemie Reinout van Schouwen BioSemantics

Sample IMPACT hackathon workflow (1)

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Workflow that implements the Use Case for Group 2 at the IMPACT/Taverna hackathon. What it does is to take the URL of a TIFF image and compute the Levenshtein difference between the OCR output of the uncompressed version with various ones compressed at various bit rates.

Created: 2011-11-14 | Last updated: 2012-06-19

Credits: Donal Fellows

A heuristic measure for detecting undesire... (2)

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The workflow takes TIFF image instances as input, applies a list of JP2 compression parameter values, executes OCR using an open source OCR engine, evaluates the results, and creates a diagram visualising the results. Dependencies on external tools for the tool service components: Tesseract ImageMagick Kakadu Gnuplot Dependencies on external Java libraries of beanshells: Apache commons lang

Created: 2012-02-06 | Last updated: 2012-03-09

Credits: Sven

hierarchical microarray clustering (1)

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To illustrate our caGrid plug-in’s application, we tested it with a microarray hierarchical clustering workflow that involves services hosted at multiple institutions. Microarrays are a high-throughput technology used to measure the expression of tens of thousands of genes in different tissues or cells. Scientists represent the data from each microarray via a vector (profile) in which each element represents a gene’s expression level. They use clustering analysis to identify sim...

Created: 2008-12-05 | Last updated: 2008-12-05

Credits: Wei Tan

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Pascal Aventurier

Joined: Friday 07 August 2009 13:20:39 (UTC)

Website:http://www.avignon.inra.fr/ist | Email (public):pascal.aventurier [at] avignon.inra.fr

Field/Industry:scientific information, | Occupation/Role(s):information sciences ingeneer

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**TUTORIAL ANNOUNCEMENT: Introduction to Implementin...

Created: 2011-05-24 15:56:58 | Last updated: 2011-05-24 15:56:59

Credits: George

License: Creative Commons Attribution-Share Alike 3.0 Unported License

File type: Word document

Comments: 0 | Viewed: 28 times | Downloaded: 18 times

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Harries Stevens

Joined: Saturday 28 November 2015 14:38:48 (UTC)

Website:http://mkpct.org.uk/

Get Molecular Interactions from a PSICQUIC... (3)

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Check the different iput parameter you could use for this workflow in ... http://code.google.com/p/psicquic/wiki/RestAccess Check available PSICQUIC Services in ... http://www.ebi.ac.uk/Tools/webservices/psicquic/registry/registry?action=STATUS More about PSICQUIC ... http://code.google.com/p/psicquic/

Created: 2011-07-22 | Last updated: 2013-07-10

Credits: Rafael C. Jimenez

sbml2Prism Web service (1)

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For example of the SBML to PRISM translation and the description of its details see http://www.prismmodelchecker.org/manual/RunningPRISM/SupportForSBML .

Created: 2011-01-26 | Last updated: 2011-01-26

Credits: trybik

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Brian Rea

Joined: Monday 19 May 2008 15:30:42 (UTC)

Last active:Thursday 23 July 2009 17:05:09 (UTC)

Website:http://www.nactem.ac.uk | Email (public):brian.rea [at] manchester.ac.uk

Field/Industry:Text Mining | Occupation/Role(s):Research Associate

Gene annotation pipeline for the Graves di... (2)

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This is a revised workflow for the Graves disease scenario gene annotation pipeline used in the myGrid project. The workflow had to be re-written due to the loss of the services invoked in the original workflow.

Created: 2007-10-03 | Last updated: 2007-11-22

Credits: Katy Wolstencroft Peter Li

Text preprocessing (1)

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The input to this workflow is plain text. The text is preprocessed so that non- alfanumeric symbols are removed, the text is transformed to to lower case and stop words are removed. The workflow first removes the charachters from this set: `~!@#$%^&*()_+=-{}|\][":;'?><,./. Then it transforms the text to lower case. The user will be prompted to select a dictionary for stop words from a list. The workflow will, based on the selected list, remove the stop words. Stop words are...

Created: 2011-01-07 | Last updated: 2011-01-07

Credits: Petra Kralj Novak

Define one query and retrieve Molecular In... (3)

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Define one query and retrieve Molecular Interactions from PSICQUIC Services registered in the PSICQUIC registry.

Created: 2011-01-31 | Last updated: 2013-07-10

Credits: Rafael C. Jimenez

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Interactive Proteomics Data Enrishment Tutorial

Created: 2013-01-09 10:48:37

Credits: kmezhoud

License: Creative Commons Attribution-Share Alike 3.0 Unported License

File type: Adobe PDF

Comments: 0 | Viewed: 17 times | Downloaded: 49 times

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CWA working group 2.6: Nanopublications

Created: Wednesday 12 August 2009 14:12:31 (UTC)

1 shared item   |   1 announcements

Latest announcement:: Nanopublication / Format Working Group Mailing List