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Items tagged with "owl" (5)

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Blob Murin.owl ontology from Bio2RDF project

Created: 2009-02-17 05:02:44

Credits: User Francois Belleau

License: Creative Commons Attribution-Share Alike 3.0 Unported License

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File type: Binary data

Comments: 0 | Viewed: 65 times | Downloaded: 63 times

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Groups (1)
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Network-member Semantic_BioAID_collaboration


Created: Friday 22 August 2008 10:49:27 (UTC)

Group for collaboration of Andy, Scott, and Marco.

5 shared items   |   1 announcements

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Packs (1)

Pack Visualize PAV provenance as SVG


Created: 2013-04-05 09:18:51 | Last updated: 2018-01-04 11:39:09

A workflow that converts PAV provenance to SVG by inferring PROV-O statements.VoID descriptions following the Open PHACTS Dataset descriptions specification are fetched as Turtle, cleaned up to be valid OWL2 ontology and include useful labels, processed through the OWL reasoner Pellet; this adds inferred PROV statements to the RDF, which is then fed to the PROV Toolbox, generating an SVG visualization of the provenance.Note that this workflow downloads CWM, Pellet and ProvToolbox on dema...

11 items in this pack

Comments: 0 | Viewed: 80 times | Downloaded: 10 times

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Workflows (2)

Workflow BioAID_EnirchBioModelWithProteinsFromText (7)

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This workflow is for demonstration purposes only. Please contact the authors if you wish to try it. We will gladly collaborate with you. Summary This workflow extracts proteins and protein relations from Medline. Extracted protein names (symbols of at least 3 characters) are validated against mouse, rat, and human UniProt symbols, so the results are limited to these species. This workflow follows the following basic steps: it retrieves documents relevant for the query string i...

Created: 2009-05-16 | Last updated: 2009-05-16

Credits: User Marco Roos User Sophia katrenko User Andrew Gibson User M. Scott Marshall User Willem van Hage User Edgar User Martijn Schuemie Network-member AID

Workflow Visualize PAV provenance as SVG (2)

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VoID descriptions are fetched as Turtle, cleaned up to be valid OWL ontology and include useful labels, processed through the OWL reasoner Pellet; this adds inferred PROV statements to the RDF, which is then fed to the PROV Toolbox, generating an SVG visualization of the provenance. Note that this workflow downloads CWM, Pellet and ProvToolbox on demand, and uses UNIX command line tools like wget and md5 which are unlikely to work in Windows. This workflow has been tested on Ubuntu 12.10 wit...

Created: 2013-03-05 | Last updated: 2013-04-05

Credits: User Stian Soiland-Reyes

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Linked Data

Non-Information Resource URI: https://www.myexperiment.org/tags/357


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