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Items tagged with "services" (22)

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Network-member National Centre for Text Mining (NaCTeM)

Unique name: nactem
Created: Monday 19 May 2008 16:56:09 (UTC)

A group representing researches at the National Centre for Text Mining - www.nactem.ac.uk The National Centre for Text Mining (NaCTeM) is the first publicly-funded text mining centre in the world. We provide text mining services in response to the requirements of the UK academic community. NaCTeM is operated by the University of Manchester with close collaboration with the University of Tokyo....

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Workflows (21)
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Workflow Test SoapLab Service Availability (1)

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This workflow tests for all Taverna workflows stored at myExperiment wether theS oapLab services used still exists. For each SOAP/WSDL service it checks wether the SoapLab service can still be accessed. The output is among others a report of accessible SoapLab services inaccessible SoapLab services

Created: 2009-05-29 | Last updated: 2009-05-29

Credits: User Wassinki

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Workflow Test SOAP/WSDL Service Availability (1)

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This workflow tests for all Taverna workflows stored at myExperiment wether the SOAP/WSDL services used still exists. For each SOAP/WSDL service it checks wether the WSDL file is still accessible and whether the operation is still exists. The output is among others a report of accessible services and operation, operations which WSDL file is not accessible, operations which WSDL file still exists, but the operation is not defined anymore. The last set needs to be checked by hand, because...

Created: 2009-05-29

Credits: User Wassinki

Workflow Biomart and EMBOSS analysis (1)

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Using Biomart and EMBOSS soaplab services, This workflow retrieves a number of sequences from 3 species: mouse, human, rat; align them, and returns a plot of the alignment result. Corresponding sequence ids are also returned.

Created: 2009-07-03 | Last updated: 2009-07-03

Credits: User Stian Soiland-Reyes

Attributions: Workflow BiomartAndEMBOSSAnalysis

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Workflow Term Extraction with NaCTeM's TerMine Tool (2)

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Pass in text and retrieve a list of terms discovered ranked by their importance within the text.

Created: 2009-07-23

Credits: User Brian Rea Network-member National Centre for Text Mining (NaCTeM)

Workflow Download CAS numbers and save as SD file (1)

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Download molecules from a REST services using the CAS registry number, create 3D coordinates and save the results as a MDL SD file.

Created: 2009-10-15

Credits: User Egon Willighagen

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Workflow retrieve protein sequence and do a high sp... (1)

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retrieve protein sequence and do a high speed BLAST and extract position from DDBJ Web services informations on Web services available at http://xml.nig.ac.jp/index.html example accession : Q9NRA8 database : ddbjbct program : tblastn param : -b 100 -v 100

Created: 2010-07-21 | Last updated: 2010-07-21

Credits: User Lebreton

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Workflow retrieve protein sequence and do a BLAST w... (1)

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retrieve protein sequence and do a BLAST with options from DDBJ Web services informations on Web services available at http://xml.nig.ac.jp/index.html exxample accession : Q9NRA8 database : UNIPROT program : blastp param : -b 5 -m 7    

Created: 2010-07-21 | Last updated: 2010-09-01

Credits: User Lebreton

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Workflow retrieve protein sequence and do a BLAST a... (1)

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retrieve protein sequence and do a BLAST and extract position from DDBJ Web services   informations on Web services available at http://xml.nig.ac.jp/index.html example accession : Q9NRA8 database : UNIPROT program : blastp  

Created: 2010-07-21 | Last updated: 2010-07-21

Credits: User Lebreton

Attributions: Workflow BLAST using DDBJ service

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Workflow retrieve nucleotide sequence and do a BLAS... (1)

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retrieve nucleotide sequence and do a BLAST and extract position from DDBJ Web services informations on Web services available at http://xml.nig.ac.jp/index.html example : accession : AB000100 database : DDBJ program : blastn    

Created: 2010-07-21 | Last updated: 2010-07-21

Credits: User Lebreton

Attributions: Workflow BLAST using DDBJ service

Uploader

Workflow retrieve nucleotide sequence and do a high... (4)

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retrieve nucleotide sequence and do a high speed BLAST and extract position from DDBJ Web services informations on Web services available at http://xml.nig.ac.jp/index.html example accession : AB000100 database : DDBJ program : blastn param : -b 5 -m 7

Created: 2010-07-21 | Last updated: 2010-09-07

Credits: User Lebreton

Uploader

Workflow retrieve nucleotide sequence and do a BLAS... (1)

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retrieve nucleotide sequence and do a BLAST with options from DDBJ Web services informations on Web services available at http://xml.nig.ac.jp/index.html example accession : AB000100 database : DDBJ program : blastn param : -b 5 -m 7

Created: 2010-07-21 | Last updated: 2010-07-21

Credits: User Lebreton

Uploader

Workflow retrieve nucleotide sequence and do a VecS... (1)

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retrieve nucleotide sequence and do a VecScreen from DDBJ Web services : A system for quickly identifying segments of a nucleic acid sequence that may be of vector origin   informations on Web services available at http://xml.nig.ac.jp/index.html accession : AB000100

Created: 2010-07-21 | Last updated: 2010-09-01

Credits: User Lebreton

Uploader

Workflow retrieve protein sequence and do a high sp... (1)

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retrieve protein sequence and do a high speed BLAST from DDBJ Web services informations on Web services available at http://xml.nig.ac.jp/index.html example accession : Q9NRA8 database : ddbjbct program : tblastn param : -b 100 -v 100

Created: 2010-09-01 | Last updated: 2010-09-01

Credits: User Lebreton

Attributions: Workflow retrieve protein sequence and do a high speed BLAST and extract position from DDBJ Web services

Uploader

Workflow retrieve protein sequence and do a BLAST f... (1)

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retrieve protein sequence and do a BLAST from DDBJ Web services   informations on Web services available at http://xml.nig.ac.jp/index.html example accession : Q9NRA8 database : UNIPROT program : blastp  

Created: 2010-09-01 | Last updated: 2010-09-01

Credits: User Lebreton

Attributions: Workflow retrieve protein sequence and do a BLAST and extract position from DDBJ Web services

Uploader

Workflow retrieve nucleotide sequence and do a high... (1)

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retrieve nucleotide sequence and do a high speed BLAST from DDBJ Web services informations on Web services available at http://xml.nig.ac.jp/index.html accession : AB000100 database : DDBJ program : blastn param : -b 5 -m 7

Created: 2010-09-01 | Last updated: 2010-09-01

Credits: User Lebreton

Uploader

Workflow retrieve nucleotide sequence and do a BLAS... (1)

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retrieve nucleotide sequence and do a BLAST from DDBJ Web services informations on Web services available at http://xml.nig.ac.jp/index.html example : accession : AB000100 database : DDBJ program : blastn 

Created: 2010-09-01 | Last updated: 2010-09-01

Credits: User Lebreton

Attributions: Workflow retrieve nucleotide sequence and do a BLAST and extract position from DDBJ Web services

Workflow Calculate molecular descriptors with OpenT... (1)

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 Queries an OpenTox ontology server for available molecular descriptor, picks one, and calculates the descriptor value for a few molecules.

Created: 2010-10-30 | Last updated: 2010-10-30

Credits: User Egon Willighagen

Workflow WPS orchestration example, image metadata ... (1)

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1 image inputs (GeoTIFF, JPEG,PNG), metadata from gdalinfo and histogram analisys, histogram result is a PNG image in base64 coding (default WPS service encoding) that will be converted to binary.

Created: 2011-03-03 | Last updated: 2011-03-03

Credits: User Jorgejesus

Workflow Basic Call of HELIO Coordinate Transformat... (1)

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Transforms an input VOTable Coordinate set to a specified output VOTable Coordinate set. This workflow performs some remote computation and may take some time to complete.

Created: 2011-11-08 | Last updated: 2011-11-08

Credits: User Anja Le Blanc

Workflow Use of rest services described with PDL (1)

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Workflow that exemplifies the use of PDL (parameter description language) descriptions for rest services. There are two cases. - the artifact provides as output the response from the service (rest config). - the web service provides a VOTable that is processed according to the PDL description. Some of the columns in the votable are provided as output in the artifacts (smartVOrest config).

Created: 2013-09-20

Credits: User Julian Garrido

Workflow Example of interoperability validation on ... (2)

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Workflow that exemplifies the use of PDL (parameter description language) descriptions for rest services. The web service provides a VOTable that is processed according to the PDL description. Some of the columns in the votable are provided as output in the artifacts (smartVORest config). To check interoperability we have to validatate the connections between outputs and inputs of the artifacts. In this case, there is an error in the connections. dec output is connected to dec input but d...

Created: 2013-09-20 | Last updated: 2013-10-31

Credits: User Julian Garrido

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Non-Information Resource URI: https://www.myexperiment.org/tags/784


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