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Items tagged with "services" (20)

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Workflows (19)

Taverna 1 Original Uploader Wassinki	Test SoapLab Service Availability (v1) Created: 29/05/09 @ 10:13:45 \| Last updated: 29/05/09 @ 10:14:47 Credits: Wassinki License: Creative Commons Attribution-Share Alike 3.0 Unported License This workflow tests for all Taverna workflows stored at myExperiment wether theS oapLab services used still exists. For each SOAP/WSDL service it checks wether the SoapLab service can still be accessed. The output is among others a report of accessible SoapLab services inaccessible SoapLab services Rating: 0.0 / 5 (0 ratings) \| Versions: 1 \| Reviews: 0 \| Comments: 0 \| Citations: 0 Viewed: 43 times \| Downloaded: 29 times Tags (3): services \| workflow \| workflows	View Download (v1)
Taverna 1 Original Uploader Wassinki	Test SOAP/WSDL Service Availability (v1) Created: 29/05/09 @ 10:15:41 Credits: Wassinki License: Creative Commons Attribution-Share Alike 3.0 Unported License This workflow tests for all Taverna workflows stored at myExperiment wether the SOAP/WSDL services used still exists. For each SOAP/WSDL service it checks wether the WSDL file is still accessible and whether the operation is still exists. The output is among others a report of accessible services and operation, operations which WSDL file is not accessible, operations which WSDL file still exists, but the operation is not defined anymore. The last set needs to be checked by hand, because... Rating: 0.0 / 5 (0 ratings) \| Versions: 1 \| Reviews: 0 \| Comments: 0 \| Citations: 0 Viewed: 102 times \| Downloaded: 48 times Tags (4): myexperiment \| services \| workflow \| workflows	View Download (v1)
Taverna 2 Original Uploader Stian Soiland-Reyes	Biomart and EMBOSS analysis (v1) Created: 03/07/09 @ 14:18:28 \| Last updated: 03/07/09 @ 14:19:32 Credits: Stian Soiland-Reyes Attributions: BiomartAndEMBOSSAnalysis License: Creative Commons Attribution-Share Alike 3.0 Unported License Using Biomart and EMBOSS soaplab services, This workflow retrieves a number of sequences from 3 species: mouse, human, rat; align them, and returns a plot of the alignment result. Corresponding sequence ids are also returned. Rating: 0.0 / 5 (0 ratings) \| Versions: 1 \| Reviews: 0 \| Comments: 0 \| Citations: 0 Viewed: 86 times \| Downloaded: 23 times Tags (6): alignment \| analysis \| sequence \| services \| soaplab \| workflow	View Download (v1)
Taverna 2 Original Uploader Brian Rea	Term Extraction with NaCTeM's TerMine Tool (v1) Created: 23/07/09 @ 17:11:14 Credits: Brian Rea National Centre for Text Mining (NaCTeM) License: Creative Commons Attribution-Share Alike 3.0 Unported License Pass in text and retrieve a list of terms discovered ranked by their importance within the text. Rating: 0.0 / 5 (0 ratings) \| Versions: 1 \| Reviews: 0 \| Comments: 1 \| Citations: 0 Viewed: 62 times \| Downloaded: 33 times Tags (6): manchester \| nactem \| national centre for text mining \| part of speech tag \| services \| term discovery	View Download (v1)
Bioclipse Scripting Language Original Uploader Egon Willighagen	Download CAS numbers and save as SD file (v1) Created: 15/10/09 @ 09:05:39 Credits: Egon Willighagen License: Creative Commons Attribution-Share Alike 3.0 Unported License Download molecules from a REST services using the CAS registry number, create 3D coordinates and save the results as a MDL SD file. Rating: 0.0 / 5 (0 ratings) \| Versions: 1 \| Reviews: 0 \| Comments: 0 \| Citations: 0 Viewed: 72 times \| Downloaded: 54 times Tags (5): bioclipse \| cas_number \| cheminformatics \| file \| services	View Download (v1)
Taverna 1 Original Uploader Lebreton	retrieve protein sequence and do a high speed BLAST and extract position from DDBJ Web services (v1) Created: 21/07/10 @ 13:16:00 \| Last updated: 21/07/10 @ 13:23:12 Credits: Lebreton License: Creative Commons Attribution-Share Alike 3.0 Unported License retrieve protein sequence and do a high speed BLAST and extract position from DDBJ Web services informations on Web services available at http://xml.nig.ac.jp/index.html example accession : Q9NRA8 database : ddbjbct program : tblastn param : -b 100 -v 100 Rating: 0.0 / 5 (0 ratings) \| Versions: 1 \| Reviews: 0 \| Comments: 0 \| Citations: 0 Viewed: 18 times \| Downloaded: 13 times Tags (6): bioinformatics \| BLAST \| ddbj \| protein \| sequence \| services	View Download (v1)
Taverna 1 Original Uploader Lebreton	retrieve protein sequence and do a BLAST with options from DDBJ Web services (v1) Created: 21/07/10 @ 13:24:56 \| Last updated: 01/09/10 @ 17:37:48 Credits: Lebreton License: Creative Commons Attribution-Share Alike 3.0 Unported License retrieve protein sequence and do a BLAST with options from DDBJ Web services informations on Web services available at http://xml.nig.ac.jp/index.html exxample accession : Q9NRA8 database : UNIPROT program : blastp param : -b 5 -m 7 Rating: 0.0 / 5 (0 ratings) \| Versions: 1 \| Reviews: 0 \| Comments: 0 \| Citations: 0 Viewed: 17 times \| Downloaded: 11 times Tags (5): bioinformatics \| BLAST \| protein \| sequence \| services	View Download (v1)
Taverna 1 Original Uploader Lebreton	retrieve protein sequence and do a BLAST and extract position from DDBJ Web services (v1) Created: 21/07/10 @ 13:10:40 \| Last updated: 21/07/10 @ 13:10:41 Credits: Lebreton Attributions: BLAST using DDBJ service License: Creative Commons Attribution-Share Alike 3.0 Unported License retrieve protein sequence and do a BLAST and extract position from DDBJ Web services informations on Web services available at http://xml.nig.ac.jp/index.html example accession : Q9NRA8 database : UNIPROT program : blastp Rating: 0.0 / 5 (0 ratings) \| Versions: 1 \| Reviews: 0 \| Comments: 0 \| Citations: 0 Viewed: 17 times \| Downloaded: 10 times Tags (6): bioinformatics \| BLAST \| ddbj \| protein \| services \| xml	View Download (v1)
Taverna 1 Original Uploader Lebreton	retrieve nucleotide sequence and do a BLAST and extract position from DDBJ Web services (v1) Created: 21/07/10 @ 13:56:08 \| Last updated: 21/07/10 @ 13:58:41 Credits: Lebreton Attributions: BLAST using DDBJ service License: Creative Commons Attribution-Share Alike 3.0 Unported License retrieve nucleotide sequence and do a BLAST and extract position from DDBJ Web services informations on Web services available at http://xml.nig.ac.jp/index.html example : accession : AB000100 database : DDBJ program : blastn Rating: 0.0 / 5 (0 ratings) \| Versions: 1 \| Reviews: 0 \| Comments: 0 \| Citations: 0 Viewed: 17 times \| Downloaded: 9 times Tags (5): bioinformatics \| BLAST \| nucleotide \| sequence \| services	View Download (v1)
Taverna 1 Original Uploader Lebreton	retrieve nucleotide sequence and do a high speed BLAST and extract position from DDBJ Web services (v4) Created: 21/07/10 @ 14:08:32 \| Last updated: 07/09/10 @ 10:04:55 Credits: Lebreton License: Creative Commons Attribution-Share Alike 3.0 Unported License retrieve nucleotide sequence and do a high speed BLAST and extract position from DDBJ Web services informations on Web services available at http://xml.nig.ac.jp/index.html example accession : AB000100 database : DDBJ program : blastn param : -b 5 -m 7 Rating: 0.0 / 5 (0 ratings) \| Versions: 4 \| Reviews: 0 \| Comments: 0 \| Citations: 0 Viewed: 28 times \| Downloaded: 16 times Tags (5): bioinformatics \| BLAST \| nucleotide \| sequence \| services	View Download (v4)
Taverna 1 Original Uploader Lebreton	retrieve nucleotide sequence and do a BLAST with options from DDBJ Web services (v1) Created: 21/07/10 @ 14:21:50 \| Last updated: 21/07/10 @ 14:21:52 Credits: Lebreton License: Creative Commons Attribution-Share Alike 3.0 Unported License retrieve nucleotide sequence and do a BLAST with options from DDBJ Web services informations on Web services available at http://xml.nig.ac.jp/index.html example accession : AB000100 database : DDBJ program : blastn param : -b 5 -m 7 Rating: 0.0 / 5 (0 ratings) \| Versions: 1 \| Reviews: 0 \| Comments: 0 \| Citations: 0 Viewed: 9 times \| Downloaded: 10 times Tags (5): bioinformatics \| BLAST \| nucleotide \| sequence \| services	View Download (v1)
Taverna 1 Original Uploader Lebreton	retrieve nucleotide sequence and do a VecScreen from DDBJ Web services (v1) Created: 21/07/10 @ 14:36:36 \| Last updated: 01/09/10 @ 17:35:20 Credits: Lebreton License: Creative Commons Attribution-Share Alike 3.0 Unported License retrieve nucleotide sequence and do a VecScreen from DDBJ Web services : A system for quickly identifying segments of a nucleic acid sequence that may be of vector origin informations on Web services available at http://xml.nig.ac.jp/index.html accession : AB000100 Rating: 0.0 / 5 (0 ratings) \| Versions: 1 \| Reviews: 0 \| Comments: 0 \| Citations: 0 Viewed: 17 times \| Downloaded: 11 times Tags (4): bioinformatics \| nucleotide \| sequence \| services	View Download (v1)
Taverna 1 Original Uploader Lebreton	retrieve protein sequence and do a high speed BLAST from DDBJ Web services (v1) Created: 01/09/10 @ 17:16:24 \| Last updated: 01/09/10 @ 17:18:45 Credits: Lebreton Attributions: retrieve protein sequence and do a high speed BLAST and extract position from DDBJ Web services License: Creative Commons Attribution-Share Alike 3.0 Unported License retrieve protein sequence and do a high speed BLAST from DDBJ Web services informations on Web services available at http://xml.nig.ac.jp/index.html example accession : Q9NRA8 database : ddbjbct program : tblastn param : -b 100 -v 100 Rating: 0.0 / 5 (0 ratings) \| Versions: 1 \| Reviews: 0 \| Comments: 0 \| Citations: 0 Viewed: 19 times \| Downloaded: 13 times Tags (6): bioinformatics \| BLAST \| ddbj \| protein \| sequence \| services	View Download (v1)
Taverna 1 Original Uploader Lebreton	retrieve protein sequence and do a BLAST from DDBJ Web services (v1) Created: 01/09/10 @ 17:22:14 \| Last updated: 01/09/10 @ 17:22:37 Credits: Lebreton Attributions: retrieve protein sequence and do a BLAST and extract position from DDBJ Web services License: Creative Commons Attribution-Share Alike 3.0 Unported License retrieve protein sequence and do a BLAST from DDBJ Web services informations on Web services available at http://xml.nig.ac.jp/index.html example accession : Q9NRA8 database : UNIPROT program : blastp Rating: 0.0 / 5 (0 ratings) \| Versions: 1 \| Reviews: 0 \| Comments: 0 \| Citations: 0 Viewed: 13 times \| Downloaded: 11 times Tags (6): bioinformatics \| BLAST \| ddbj \| protein \| sequence \| services	View Download (v1)
Taverna 1 Original Uploader Lebreton	retrieve nucleotide sequence and do a high speed BLAST from DDBJ Web services (v1) Created: 01/09/10 @ 17:26:07 \| Last updated: 01/09/10 @ 17:26:39 Credits: Lebreton License: Creative Commons Attribution-Share Alike 3.0 Unported License retrieve nucleotide sequence and do a high speed BLAST from DDBJ Web services informations on Web services available at http://xml.nig.ac.jp/index.html accession : AB000100 database : DDBJ program : blastn param : -b 5 -m 7 Rating: 0.0 / 5 (0 ratings) \| Versions: 1 \| Reviews: 0 \| Comments: 0 \| Citations: 0 Viewed: 9 times \| Downloaded: 6 times Tags (5): bioinformatics \| BLAST \| nucleotide \| sequence \| services	View Download (v1)
Taverna 1 Original Uploader Lebreton	retrieve nucleotide sequence and do a BLAST from DDBJ Web services (v1) Created: 01/09/10 @ 17:31:29 \| Last updated: 01/09/10 @ 17:33:51 Credits: Lebreton Attributions: retrieve nucleotide sequence and do a BLAST and extract position from DDBJ Web services License: Creative Commons Attribution-Share Alike 3.0 Unported License retrieve nucleotide sequence and do a BLAST from DDBJ Web services informations on Web services available at http://xml.nig.ac.jp/index.html example : accession : AB000100 database : DDBJ program : blastn Rating: 0.0 / 5 (0 ratings) \| Versions: 1 \| Reviews: 0 \| Comments: 0 \| Citations: 0 Viewed: 11 times \| Downloaded: 8 times Tags (5): bioinformatics \| BLAST \| nucleotide \| sequence \| services	View Download (v1)
Bioclipse Scripting Language Original Uploader Egon Willighagen	Calculate molecular descriptors with OpenTox services (v1) Created: 30/10/10 @ 17:03:27 \| Last updated: 30/10/10 @ 17:03:31 Credits: Egon Willighagen License: Creative Commons Attribution-Share Alike 3.0 Unported License Queries an OpenTox ontology server for available molecular descriptor, picks one, and calculates the descriptor value for a few molecules. Rating: 0.0 / 5 (0 ratings) \| Versions: 1 \| Reviews: 0 \| Comments: 0 \| Citations: 0 Viewed: 16 times \| Downloaded: 8 times Tags (10): bioclipse \| cheminformatics \| descriptor \| molecular \| ontology \| opentox \| qsar \| rdf \| services \| toxicology	View Download (v1)
Taverna 2 Original Uploader Jorgejesus	WPS orchestration example, image metadata extraction (v1) Created: 03/03/11 @ 09:26:24 \| Last updated: 03/03/11 @ 09:26:28 Credits: Jorgejesus License: Creative Commons Attribution-Share Alike 3.0 Unported License 1 image inputs (GeoTIFF, JPEG,PNG), metadata from gdalinfo and histogram analisys, histogram result is a PNG image in base64 coding (default WPS service encoding) that will be converted to binary. Rating: 0.0 / 5 (0 ratings) \| Versions: 1 \| Reviews: 0 \| Comments: 0 \| Citations: 0 Viewed: 35 times \| Downloaded: 17 times Tags (9): gdal \| gdalinfo \| histogram \| image \| netmar \| orchestration \| services \| test \| wps	View Download (v1)
Taverna 2 Original Uploader Anja Le Blanc	Basic Call of HELIO Coordinate Transformation Service (v1) Created: 08/11/11 @ 15:14:33 \| Last updated: 08/11/11 @ 15:14:31 Credits: Anja Le Blanc License: Apache License v2.0 Transforms an input VOTable Coordinate set to a specified output VOTable Coordinate set. This workflow performs some remote computation and may take some time to complete. Rating: 0.0 / 5 (0 ratings) \| Versions: 1 \| Reviews: 0 \| Comments: 0 \| Citations: 0 Viewed: 4 times \| Downloaded: 5 times Tags (7): astrophysics \| coordinate transformation \| cts \| helio \| heliophysics \| services \| votable	View Download (v1)

Groups (1)

Administrator:

Brian Rea

National Centre for Text Mining (NaCTeM)

Unique name: nactem Created: Monday 19 May 2008 @ 16:56:09 (GMT)

A group representing researches at the National Centre for Text Mining - www.nactem.ac.uk The National Centre for Text Mining (NaCTeM) is the first publicly-funded text mining centre in the world. We provide text mining services in response to the requirements of the UK academic community. NaCTeM is operated by the University of Manchester with close collaboration with the University of Tokyo....

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