Workflows in this Topic

Remove duplicate strings (2)

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This workflow takes in two list of strings and then concatenates them together. Any duplicates that are present are then removed, and the resulting file is returned back to the user.

Created: 2007-10-03 | Last updated: 2007-11-13

Daily Dilbert (2)

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Retrieves the Daily Dilbert image ....to start the day with

Created: 2007-10-03 | Last updated: 2008-03-06

Fetch Dragon images from BioMoby v2 (3)

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Use the local java plugins and some filtering operations to fetch the comic strip image from http://www.dilbert.com

Created: 2007-11-29 | Last updated: 2007-11-29

Credits: Yuwei Lin David De Roure Jiten Bhagat

Get weather information (1)

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Get the weather forcast of the day for you city. Info display: wind, visibility, temperature, sky conditions and pressure. The default value is my home town. To find out any supported city run the 'Get cities by country name' workflow

Created: 2008-02-15 | Last updated: 2008-02-15

Credits: Franck Tanoh

EBI_OLS_TermInfo (1)

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Get details of an ontology term given its identifer. This workflow uses the EBI's Ontology Lookup Service (OLS) to get the details of the ontology term. The OLS suports a wide range of biological and bioinformatic ontologies. See http://www.ebi.ac.uk/ontology-lookup/ for more information.

Created: 2008-07-09

Credits: Hamish McWilliam

linking.xml (1)

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No description

Created: 2008-07-12 | Last updated: 2008-07-12

Credits: Paul Fisher

remove_duplicates_full.xml (1)

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No description

Created: 2008-07-12 | Last updated: 2008-07-12

Credits: Paul Fisher

swiss_and_name.xml (1)

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No description

Created: 2008-07-12 | Last updated: 2008-07-12

Credits: Paul Fisher

interpro_scan_2.xml (1)

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No description

Created: 2008-07-12 | Last updated: 2008-07-12

Credits: Paul Fisher

REST access of xml.nig.ac.jp (WABI) (1)

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This workflow has a beanshell script for composing the REST URL for the services at xml.nig.ac.jp  (WABI) This URL is passed to the local worker Get_web_page_from_URL that fetches the requested data. Note: This is a proof of concept of accessing REST services through Taverna. All of WABI's services can more easily be browsed and used in Taverna by adding their WSDL, for instance http://xml.nig.ac.jp/wsdl/GetEntry.wsdl The example invokes the getDDBJEntry(accession) method of the getE...

Created: 2008-10-14 | Last updated: 2008-10-14

Credits: Stian Soiland-Reyes

Fetch today's xkcd comic (1)

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Use the local java plugins and some filtering operations to fetch the comic strip image from http://xkcd.com/ Based on the FetchDailyDilbert workflow.

Created: 2009-07-03

Credits: Stian Soiland-Reyes

Attributions: Fetch today's xkcd comic

Angiogenesis Feature Extraction workflow (3)

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No description

Created: 2010-03-23 | Last updated: 2012-01-10

Credits: Charalampos

Looping over Examples for doing de-aggrega... (1)

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This process is based on (artificially generated) data that looks like it has been aggregated before. The integer attribute Qty specifies the quantity of the given item that is represented by the rest of the example. The process now loops over every example and performs on each example another loop, that will append the current example to a new example set. This example set has been created as empty copy of the original example set, so that the attributes are equally. To get access to and rem...

Created: 2010-04-29

Get KEGG gene descriptions and pathways (1)

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This workflow takes a list of KEGG gene identifiers and supplies descriptions associated to said genes + pathways including all genes and the descriptions associated to said pathways. The list_to_string local beanshell scripts merely transform a given list into a string of unique not-null elements separated by new lines (for batch btit use). Note that the input is a real taverna list : multiple values must be declared as multiple values instead of a single string value with distinct identif...

Created: 2010-04-30 | Last updated: 2010-04-30

Credits: Nadia Cerezo Paul Fisher

Attributions: Get Kegg Gene information

Select from a list of possible web service... (1)

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The workflow for selecting from a list of possible web service parameter values has two input ports: the wsdl address of the web service and the variable name. It parses the web service wsdl description (the web service http://ropot.ijs.si/webservices/janez/getvalues.php?wsdl does that) and then it asks the user to select one value from a drop-down menu. This workflow is very useful when web services have inputs which expect as a parameter one value from a list of possible values.

Created: 2010-12-23 | Last updated: 2010-12-23

Credits: Petra Kralj Novak Janez Kranjc

Download the ONS solubility data from Goog... (1)

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 Use the Bioclipse scripting langauge to authenticate with Google Docs, and download the Open Notebook Science solubility data into a local data structure.

Created: 2011-06-06 | Last updated: 2011-06-06

Credits: Egon Willighagen

blastn and blastx (1)

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This workflow accepts an url of a fasta file as input and performs an NCBI blastn at the EBI against the bacteria database and an NCBI blastx against the uniref90 database.  From the blast results of the blastx the hit with the lowest e-value is taken and the GO is returned. Output is blastx and blastn results and GO from the first hit of the blastx.   Based on Katy Wolstencroft & Hamish McWilliam EBI_NCBI_BLAST http://www.myexperiment.org/workflows/1765.html

Created: 2011-06-08 | Last updated: 2011-06-08

Credits: Niek

Mining Semantic Web data using FastMap - E... (1)

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This workflow describes how to learn from the Semantic Web's data. The input to the workflow is a feature vector developed from a RDF resource. The loaded example set is then divided into training and test parts. These sub-example sets are used by the FastMap operators (encapsulate the FastMap data transformation technique), which processes each feature at a time and transform the data into a different space. This transformed data is more meaningful and helps the learner to improve classfica...

Created: 2011-06-25 | Last updated: 2011-06-25

Mining Semantic Web data using Corresponde... (1)

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This workflow describes how to learn from the Semantic Web's data using a data transformation algorithm 'Correspondence Analysis'. The input to the workflow is a feature vector developed from a RDF resource. The loaded example set is divided into training and test parts. These sub-example sets are used by the Correspondence Analysis operators (encapsulate the Correspondence Analysis data transformation technique) which processes each feature at a time and transform the data into a different...

Created: 2011-06-25 | Last updated: 2011-06-25

Mining Semantic Web data using Corresponde... (1)

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This workflow will explain that how an example set can be extracted from an RDF resource using the provided SPARQL query. This example set is then divided into training and test parts. These sub-example sets are used by the Correspondencce Analysis operators (encapsulate the Correspondencce Analysis data transformation technique) which processes each feature at a time and transform the data into a different space. This transformed data is more meaningful and helps the learner to improve clas...

Created: 2011-06-25 | Last updated: 2011-06-25

Seven day weather by zip code (1)

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Get the seven day weather forcast for your zip code. Info display: wind, visibility, temperature, sky conditions and pressure.  Add zip code values to get weather information.

Created: 2011-09-10 | Last updated: 2011-09-14

Credits: Wdsnellg

Fetch today's Johnny Wander Comic (1)

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Use the local java plugins and some filtering operations to fetch the comic strip image from http://www.johnnywander.com/ Based on the FetchDailyDilbert workflow & Fetch today's XKDC comic

Created: 2011-09-12 | Last updated: 2011-09-12

Credits: tpacurtis Franck Tanoh

Attributions: Fetch today's xkcd comic

Get Recent Cards From Indexed (1)

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This gets the jpgs from the "This is Indexed" URL: http://thisisindexed.com/page/2/ using the regular expression .*/uploads/*. pull everything in the "uploads" directory. Based on "Fetch today's xkcd comic" by Tom Oinn, Stian Soiland-Reyes Use the local java plugins and some filtering operations to fetch the comic strip image from http://xkcd.com/

Created: 2011-09-13 | Last updated: 2011-09-13

Get My Weather (1)

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Gets a variety weather info for "Cleveland" and "Indianapolis" Based on "Get weather information" by Franck Tanoh

Created: 2011-09-13 | Last updated: 2011-09-13

Credits: Mutanthumb

ZipCodeGetWeatherInfo (1)

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Gives the 7 day weather forecast by Zip Code Info display: wind, visibility, temperature, sky conditions and pressure. Based on "Get Weather Info" by Franck Tanoh

Created: 2011-09-13 | Last updated: 2011-09-13

Credits: Mutanthumb

Get 7 Days Weather by Zip Code (1)

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This workflow allows for the input of a list of zipcodes and outputs the weather for the zip codes.

Created: 2011-09-13 | Last updated: 2011-09-13

Credits: tpacurtis

Fetch today's Dinosaur Comic (http://qwant... (1)

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This workflow retrieves the newest comic from http://qwantz.com. Using a string constant to input the URL, the workflow then copies the HTML code from the location indicated by the URL. A list of links to images is then taken from the HTML code. Using a regluar expression supplied by another string constant, this list is then search for the URL specificallyt for the comic. The image file for the comic is then retrieved and the comic is displayed as the workflow output.img, #cubbies-overlay{ -...

Created: 2011-09-13 | Last updated: 2011-09-14

Attributions: Fetch today's xkcd comic

City weather information (1)

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Get the weather forcast of the day for you city. Info display: wind, visibility, temperature, sky conditions and pressure. The default value is my home town. To find out any supported city run the 'Get cities by country name' workflow

Created: 2011-09-14 | Last updated: 2011-09-14

Credits: Wdsnellg

Fetch today's cat and girl comic (1)

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Use the local java plugins and some filtering operations to fetch the comic strip image from http://catandgirl.com/, your major source of essential lead. Based on the Fetch today's xkcd workflow.

Created: 2011-09-14 | Last updated: 2011-09-14

Credits: Atminer

Attributions: Fetch today's xkcd comic

Fetch today's Girls with Slingshots comic (1)

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This workflow uses local java plugins and filtering operations to fetch today's comic strip image from http://www.girlswithslingshots.com/. Girls with Slingshots focuses on the lives of a group of women in their twenties. It is one of the few major webcomics to pass the Bechdel test. Based on the workflow "Fetch today's xkcd comic" by Tom Oinn and Stian Soiland-Reyes.

Created: 2011-09-14 | Last updated: 2011-09-14

Credits: Kayleigh Ayn Bohémier

Attributions: Fetch today's xkcd comic Daily Dilbert

Seven-Day Forecast (1)

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This workflow takes a list of zipcodes and generates their seven-day weather reports using the USA Weather Forecast from http://www.webservicex.net/WS/WSDetails.aspx?WSID=68&CATID=12 The output includes maximum and minimum temperatures in both Fahrenheit and Celsius.

Created: 2011-09-14

Credits: Kayleigh Ayn Bohémier

Attributions: Get weather information

Population histogram in R (with Ask Box!) (1)

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This workflow fetches the details of the countries in the world and then uses R to produce a histogram of the log of their population. Prompts the user to enter a title for the histogram.

Created: 2011-09-21 | Last updated: 2011-09-21

Credits: tpacurtis Alan Williams

Attributions:

Population histogram in R (1)

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This workflow fetches the details of the countries in the world and then uses R to produce a histogram of the log of their population

Created: 2011-09-21 | Last updated: 2011-09-21

Credits: Wdsnellg

Statistics example (1)

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This workflow allows one to find the average and standard deviation of a set of values.

Created: 2011-09-21 | Last updated: 2011-09-21

Credits: Wdsnellg

Concatenated List of Values (1)

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This workflow takes multiple lists of values and finds the standard deviation and average of the provided values. It then concatenates each value into a single string.

Created: 2011-09-21 | Last updated: 2011-09-21

Credits: tpacurtis

Single list with statistics values (#2 Par... (1)

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This workflow allows one to produce a single list of statistical output with the list name, average, and standard deviation of the values.  This workflow only produces the average and standard deviation from the input values

Created: 2011-09-21 | Last updated: 2011-09-21

Credits: Wdsnellg

Spreadsheet Import Fertilizer Use (1)

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Example using the SpreadsheetImport service to import data from an Excel spreadsheet. The workflow imports the file spreadsheet file FertilizerUse.xlsx and generates a graph from the date. The source data is from http://www.myexperiment. org/files/568/download/FertilizerUse.xls and ERS, TVA (Tennessee Valley Authority), AAPFCO (Association of American Plant Food Control Officials), TFI (The Fertilizer Institute).

Created: 2011-09-21 | Last updated: 2011-09-21

Credits: tpacurtis Alan Williams

Attributions: Spreadsheet Import Example US Fertilizer Use

US Consumption of Plant Nutrients (1)

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This workflow takes data from the ERS, TVA (Tennessee Valley Authority), AAPFCO (Association of American Plant Food Control Officials), and the TFI (The Fertilizer Institute) and represents them in a bar chart.

Created: 2011-09-21 | Last updated: 2011-09-21

Credits: Kayleigh Ayn Bohémier

Attributions: Spreadsheet Import Example US Fertilizer Use

Broccoli: A State Comparison (1)

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Imports data from NY and NJ to compare broccoli harvest vs. planting rates across the two states. The workflow is currently set to evaluate data from 1960 to 1965. Source: Compiled by ERS from data of USDA, National Agricultural Statistics Service, Vegetables Final Estimates.

Created: 2011-09-21 | Last updated: 2011-09-21

Credits: Kayleigh Ayn Bohémier

Attributions: Spreadsheet Import Example NJ Broccoli Production NY Broccoli Production

Standard Deviation and Mean Values from a ... (1)

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This incredibly awkward script has another embedded script associated with it. It essentially smashes the output from the other workflows together using a Beanshell script.

Created: 2011-09-21 | Last updated: 2011-09-21

Credits: Kayleigh Ayn Bohémier

Attributions: Input for PS3 # 2 Part 2

Standard Deviation From a Text File: Neste... (1)

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This workflow takes an input file of a list of numbers and runs it through a simple Python script to produce the standard deviation and average.

Created: 2011-09-21 | Last updated: 2011-09-21

Credits: Kayleigh Ayn Bohémier

Attributions: Standard Deviation and Mean Values from a Text File Input for PS3 # 2 Part 2

Python Average and Standard Deviation (2)

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This workflow uses a Python script to take a provided filename (or list of filenames) containing numbers (one per line) and return the standard deviation and average (or mean).

Created: 2011-09-21 | Last updated: 2011-09-21

Credits: Kayleigh Ayn Bohémier

Attributions: Executes Python script Input for PS3 #2 Part 1

New York vs. New Jersey Broccoli Production (1)

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Uses the SpreadsheetImport service to import data from an Excel spreadsheet. The workflow imports two files and generates a single graph comparing the information from the two spreadsheets.

Created: 2011-09-21 | Last updated: 2011-09-21

Credits: tpacurtis Alan Williams

Attributions: Spreadsheet Import Example NY Broccoli Production NJ Broccoli Production

Population histogram in R (1)

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This workflow fetches the details of the countries in the world and then uses R to produce a histogram of the log of their population

Created: 2011-09-21 | Last updated: 2011-09-21

Credits: Chrisser

Attributions:

IST600 - Spreadsheet Import Example (1)

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Example using the SpreadsheetImport service to import data from an Excel spreadsheet. The workflow imports the file spreadsheet FertilizerUse.xls and generates a graph from the date. The spreadsheet is available at http://www.myexperiment. org/files/568/download/FertilizerUse.xlsimg, #cubbies-overlay{ -moz-transition-property: margin, box-shadow, z-index; -moz-transition-duration: 0.1s; -webkit-transition-property: margin, box-shadow, z-index; -webkit-transition-duration: 0.1s; } .cubbies-s...

Created: 2011-09-21 | Last updated: 2011-09-21

Credits: Chrisser

slightly more complicated Spreadsheet Impo... (1)

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Example using two instances of the SpreadsheetImport service to import data from  Excel spreadsheets. The workflow imports these file spreadsheets f and generates a graph comparing the data.img, #cubbies-overlay{ -moz-transition-property: margin, box-shadow, z-index; -moz-transition-duration: 0.1s; -webkit-transition-property: margin, box-shadow, z-index; -webkit-transition-duration: 0.1s; } .cubbies-selected{ z-index: 9999; box-shadow: 3px 3px 8px -1px blue !important; cursor: pointer ...

Created: 2011-09-21 | Last updated: 2011-09-21

Credits: Chrisser Wdsnellg tpacurtis

Attributions: Spreadsheet Import Example

Concatenated String of Sentences (1)

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A workflow that concatenates a series of sentences into a single string. Sample data is from hipsteripsum.me.

Created: 2011-09-22 | Last updated: 2011-09-22

Credits: tpacurtis Matt Jones

Simple Equation Solver (1)

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This workflow solves for the problem x = 3 : |(x+5)/(x-5)|.

Created: 2011-09-22 | Last updated: 2011-09-22

Credits: tpacurtis Matt Jones

Fetch Image from a URL (1)

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This workflow in Kepler fetches an Image from a URL, and displays the image in a new window.

Created: 2011-09-22 | Last updated: 2011-09-22

Credits: tpacurtis

HipsterWorld (1)

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Created: 2011-09-24 | Last updated: 2011-09-24

Credits: Atminer

arithmetic (1)

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Created: 2011-09-24

Credits: Atminer

String input for Kepler (1)

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This Kepler workflow allows one to display multiple strings together with the use of a display actor with its input multiport.  The result is each string output on a line, but all together.

Created: 2011-09-27 | Last updated: 2011-09-27

Credits: Wdsnellg

Simple addition Kepler workflow expanded (1)

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This Kepler allows one to perform mathematical equations, including addition, subtraction, muliplication, and division. 

Created: 2011-09-27 | Last updated: 2011-09-27

Credits: Wdsnellg

Fetch Buni in Kepler (1)

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This Kepler allows one to fetch a Buni comic from the image URL.

Created: 2011-09-27 | Last updated: 2011-09-27

Credits: Wdsnellg

Hello Hipster (1)

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This script is based on the classic "Hello World" in Kepler created by Matt Jones (May 2006) at NCEAS.   It takes a string of phrases from the generator at http://hipsteripsum.me/ and consolidates the strings into one long paragraph.

Created: 2011-09-27 | Last updated: 2011-09-27

Credits: Kayleigh Ayn Bohémier

Complex Addition (1)

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 This workflow provides a way to do more complex addition/subtraction (and mutliplication/division) operations in Kepler. All of the input values are completely customizable.   Based on the workflow 01-SimpleAddition.kar by Matt Jones (NCEAS) in May 2006. The workflow is packaged with Kepler.

Created: 2011-09-27 | Last updated: 2011-09-27

Credits: Kayleigh Ayn Bohémier

Get Silly Vamp (1)

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This workflow grabs the Silly Vamp comic strip. It is inspired by the Taverna workflow to get the latest XKCD comic.   The comic date can be customized. Please right-click on "IMAGE NAME" and change the value to the specific date you want. The date format is   YYMMDD   For example, June 26, 2011 would be:   110626

Created: 2011-09-27 | Last updated: 2011-09-27

Credits: Kayleigh Ayn Bohémier

Complex Addition Part 2 (1)

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This workflow provides a way to do more complex addition/subtraction (and mutliplication/division) operations in Kepler. All of the input values are completely customizable. This is the second of two workflows (the extra credit).   Based on the workflow 01-SimpleAddition.kar by Matt Jones (NCEAS) in May 2006. The workflow is packaged with Kepler.

Created: 2011-09-27 | Last updated: 2011-09-27

Credits: Kayleigh Ayn Bohémier

Attributions: Complex Addition

Hello Hipster (1)

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Created: 2011-09-28 | Last updated: 2011-09-28

Credits: Mutanthumb

Absolute Value (1)

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Created: 2011-09-28 | Last updated: 2011-09-28

Credits: Mutanthumb

Kepler Comic (1)

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Created: 2011-09-28 | Last updated: 2011-09-28

Credits: Mutanthumb

Fetch a cat and girl comic (1)

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Created: 2011-09-28 | Last updated: 2011-09-28

Credits: Atminer

Make cat and girl date (1)

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Created: 2011-09-28 | Last updated: 2011-09-28

Credits: Atminer

Fetch dinosaur comic (1)

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This workflow fetches a comic from http://qwantz.com  

Created: 2011-09-28 | Last updated: 2011-09-28

Credits: Chrisser

Extract Gene Sequence with Kepler (1)

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This is a workflow which allows one to extract gene sequence information using the accession number as the input.  Multiple outputs include a file output of sequence header information, as well as one output window of base pair count, ratios and gene sequence.

Created: 2011-10-05 | Last updated: 2011-10-05

Credits: Wdsnellg

What's the Season? (1)

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When given a list of astronomical object names, this workflow will check them against a simple Excel spreadsheet and return which season the object is best observed in. It will also compare the distances to the objects in a Google Charts bar chart. A later version of this may switch to a scatter plot, depending on whether or not this works with the Google Chart API. Running this workflow requires Python. Sys and string should be bundled in Python, but the numpy module will need to be downloa...

Created: 2011-10-05 | Last updated: 2011-10-05

Attributions: Spreadsheet Import Example

Time Series Data Graphed and Cited (1)

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This workflow uses time series data from Rob Hyndman's Time Series Data Library (TSDL) and graphs it with Google charts. It also provides the citation information with the current date. The outputs are a Google Chart and the corresponding citation information. The inputs are URL strings for two datasets provided by Rob Hyndman under the subject of Ecology. These datasets include the annual number of lynx pelts and the annual unit price of lynx pelts during the year range 1857 -1911. This...

Created: 2011-10-05 | Last updated: 2011-10-05

Credits: Trisha Adamus Alan Williams Jeff adamus

Attributions: Fetch today's xkcd comic Spreadsheed Data Import Example HTML Citation Extraction Current Date Output

[untitled] (1)

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This workflow ...tbc img, #cubbies-overlay{ -moz-transition-property: margin, box-shadow, z-index; -moz-transition-duration: 0.1s; -webkit-transition-property: margin, box-shadow, z-index; -webkit-transition-duration: 0.1s; } .cubbies-selected{ z-index: 9999; box-shadow: 3px 3px 8px -1px blue !important; cursor: pointer !important; margin: -3px 3px 3px -3px; } .cubbies-selected:active{ box-shadow: 2px 2px 5px -1px darkblue !important; margin: -1px 1px 1px -1px; } #cubbies-overlay{ positio...

Created: 2011-10-06 | Last updated: 2011-10-06

Credits: Chrisser

Elevation plot v.2 (2)

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Functionally identical to the original. I tried to upload a version with annotation, but somehow the notes didn't make it to myExperiment. From the prior verion: This workflow accepts city and country names as user-supplied input. These value are supplied to the GetWeather webservice (http://www.webservicex.net/globalweather.asmx?WSDL), which returns an XML record of location and weather info for each recognized city. (See the uploaded photo "weather example") The XML returned fr...

Created: 2011-10-06 | Last updated: 2011-10-06

Credits: Chrisser

Latitude with beanshell (1)

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This workflow takes in a string value or list of values and pulls out latitude coordinates formatted as ##-##(N or S) using the following regular expression: \d\d-\d\d(N|S). The coordinates are processed and formatted to be in the form required by the web service used in my "Elevation plot" workflow. This workflow contains primarily string manipulation. For many of the text and list services used, the beanshell script needed to be modified in order to produce the formatting I requi...

Created: 2011-10-06 | Last updated: 2011-10-06

Credits: Chrisser

Longitude with beanshell (1)

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This workflow takes in a string value or list of values and pulls out longitude coordinates formatted as ###-##(N or S) using the following regular expression: \d\d\d-\d\d(E|W). The coordinates are processed and formatted to be in the form required by the web service used in my "Elevation plot" workflow. This workflow primarily contains string manipulation. For many of the text and list services used, the beanshell script needed to be modified in order to produce the formatti...

Created: 2011-10-06 | Last updated: 2011-10-06

Credits: Chrisser

Mapping Workflow - Attempt (1)

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PLEASE NOTE: This is an early variation of http://www.myexperiment.org/workflows/2474.html. This workflow was abandoned as the above mentioned workflow is more streamlined. This workflow may or may not work successfully.

Created: 2011-10-06 | Last updated: 2011-10-06

Credits: tpacurtis

Mapping Service (2)

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This service generates a google map of a group of place names and coordinates. The workflow will accept both coordinates and place names. This workflow takes place names/coordinates from both a spreadsheet, as well as on-the-fly input of a list of coordinates or place names (please note, if no supplemental data is desired, an empty link will allow the workflow to function). The Mapping Service workflow was created to assist in generating a map of where a series of interviews took p...

Created: 2011-10-06 | Last updated: 2011-10-06

Credits: tpacurtis

Population Plot with R (1)

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This script pulls the population of every country and creates a plot of them. This is based on the script at http://www.myexperiment.org/workflows/1728.html , with a few modifications for labelling axes and the title.

Created: 2011-10-08

Credits: Atminer

Broccoli Production New York State, 1960-1965 (1)

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This workflow takes data about agricultural production in New Jersey and New York from 1960 -1965, to compare productivity in broccoli growing.

Created: 2011-10-09 | Last updated: 2011-10-09

Credits: Atminer Alan Williams

Attributions: Spreadsheet Import Example

Spreadsheet Import - Fertilizer Use (1)

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This workflow takes data from a spreadsheet and creates a graph of fertilizer use in NY state from 1960-1965.

Created: 2011-10-09 | Last updated: 2011-10-09

Credits: Atminer

Attributions: Spreadsheet Import Example

Tag Clustering (TaCl) (1)

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This is a sample process for a tag clustering. See http://www-ai.cs.uni-dortmund.de/SOFTWARE/TaCl/index.html

Created: 2011-11-17 | Last updated: 2011-11-17

NSF Funds dataset US dollar to Euro curren... (1)

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This workflow uses a 2012 Fiscal Year dataset from the National Science Foundation (NSF), a currency conversion web service from WebservicesX.NET and processes data using the workflow tool Taverna.  It converts US dollars from a spreadsheet to Euros.

Created: 2011-11-25 | Last updated: 2011-11-25

Credits: Trisha Adamus

FetchandDisplaySpecies (3)

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This workflow uses GBIF to search and report species occurrence data and then displays them on Google Earth. An interactive step then allows you to alter the co-ordinates of data displayed.

Created: 2011-11-27 | Last updated: 2011-11-29

Credits: Alan Williams

Semantic clustering (with k-medoids) of SP... (1)

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The workflow uses RapidMiner extension named RMonto (http://semantic.cs.put.poznan.pl/RMonto/) to perform clustering of SPARQL query results based on chosen semantic similarity measure. Since the semantics of the backgound ontology is used in this way, we use the name "semantic clustering". The SPARQL query is entered in a parameter of "SPARQL selector" operator. The clustering operator (k-medoids) allows to specify which of the query variables are to be used as clustering criteria. If more ...

Created: 2012-01-29

Semantic clustering (with AHC) of SPARQL q... (1)

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The workflow uses RapidMiner extension named RMonto (http://semantic.cs.put.poznan.pl/RMonto/) to perform clustering of SPARQL query results based on chosen semantic similarity measure. The measure used in this particualr workflow is a kernel that exploits membership of clustered individuals to OWL classes from a background ontology ("Common classes" kernel from [1]). Since the semantics of the backgound ontology is used in this way, we use the name "semantic clustering". ...

Created: 2012-01-29 | Last updated: 2012-01-29

Semantic clustering (with alpha-clustering... (1)

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The workflow uses RapidMiner extension named RMonto (http://semantic.cs.put.poznan.pl/RMonto/) to perform clustering of SPARQL query results based on chosen semantic similarity measure. The measure used in this particualr workflow is a kernel that exploits membership of clustered individuals to OWL classes from a background ontology ("Epistemic" kernel from [1]). Since the semantics of the backgound ontology is used in this way, we use the name "semantic clustering". This ...

Created: 2012-01-29 | Last updated: 2012-01-30

Loading OWL files (RDF version of videolec... (1)

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The workflow uses RapidMiner extension named RMonto (http://semantic.cs.put.poznan.pl/RMonto/). Operator "Build knowledge base" is responsible for collecting data either from OWL files or SPARQL endpoints or RDF repositories and provide it to the subsequent operators in a workflow. In this workflow it is parametrized in this way, that is builds a Sesame/OWLIM repository from the files specified in "Load file" operators. Paths to OWL files are specified as parameter va...

Created: 2012-01-29 | Last updated: 2012-01-29

Transforming user/item description dataset... (1)

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This workflow provides transformation of an user/item description attribute set, into a format required by attribute based k-NN operators of the Recommender extension. See: http://zel.irb.hr/wiki/lib/exe/fetch.php?media=del:projects:elico:recsys_manual_v1.1.pdf to learn about formats of datasets required by Recommender extension.

Created: 2012-01-30

Run a Workflow on Taverna Server (local t2... (1)

Uses a local t2flow file to submit and run this workflow on the taverna server. You need a user name and password to execute this workflow. Input to the workflow which runs remotely will be requested interactively.

Created: 2012-02-20

Credits: Anja Le Blanc

Attributions: Run a Workflow on Taverna Server

Semantic meta-mining workflow that perform... (1)

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Performs a crossvalidation on a data set composed of meta-data of baseline RapidMiner workflows expressed in RDF with the DMOP's ontology terminology for representing processes. Includes discovery of a set of semantic features (patterns) by the Fr-ONT-Qu algorithm (‘workflow patterns’). Through propositionalisation approach those features may be used in an arbitrary (propositional) RapidMiner classification operator.

Created: 2012-03-05 | Last updated: 2012-03-05

Meta-mining workflow that performs crossva... (1)

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Performs a crossvalidation on a data set composed of baseline RapidMiner workflows described with dataset characteristics used by the given workflow and the learning algorithm used in the given workflow.

Created: 2012-03-05 | Last updated: 2012-03-05

BiomartAndEMBOSSMouseRat (1)

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This workflow retrieves all genes on human chromosome 22 that are associated with a disease and aligns the upstream regions of the mouse and rat homologues. The alignments are plotted and corresponding sequence ids are also returned.

Created: 2012-04-05

Credits: Alan Williams

Find workflow ancestors (2)

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Given a t2flow file (Taverna 2 workflow), extract ancestor workflow UUIDs and search myExperiment for matching workflow entries. Note that this will also match the workflow itself and nested workflows, but does not match against other workflows having the same ancestors (but newer UUIDs).

Created: 2012-05-08 | Last updated: 2012-07-09

Credits: Stian Soiland-Reyes

Extract DEC and RA from whitespace separat... (2)

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This workflow extracts DEC and RA coordinates from a whitespace seperated file and this is a silly description.

Created: 2012-05-10 | Last updated: 2012-09-24

Credits: Stian Soiland-Reyes

STUDY OF QUANTIFICATION OF IMPURITIES AND ... (1)

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Created: 2012-09-16

Credits: Drkrishnasarmapathy

HFC Synoptic map from date (1)

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query the HELIO Feature Catalogue, and retrieves the image with all the features catalgued for certain date.

Created: 2012-11-05

Credits: David PS