User: Tim Booth

Name: Tim Booth

Joined: Tuesday 08 January 2008 14:18:31 (UTC)

Last seen: Friday 16 May 2014 10:56:10 (UTC)

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Tim Booth

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Setup instructions for BioLinux updated

Created: 2014-02-27 18:14:25

Credits: Tim Booth Norman Morrison Francisco Quevedo

Attributions: Setup instructions for BioLinux VM

License: Creative Commons Attribution-Share Alike 3.0 Unported License

Updated version of the instructions posted by Norman

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Tim Booth

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Rserve on Bio-Linux

Created: 2014-02-13 14:55:21

Credits: Tim Booth

License: Creative Commons Attribution-Share Alike 3.0 Unported License

The recommended way to run Rserve on Bio-Linux is to install the "r-cran-rserve" package - ie:$ sudo apt-get install r-cran-rserve(Note - this wasn't working on the morning of the 13th but has now been fixed in version 1.7-3-0biolinux2)If you install the library by using install.packages("Rserve") it will work but it will not get updated and will mask the system version of Rserve, which could cause you hard-to-diagnose problems down the line. My recommendation is...

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Taverna 1

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Tim Booth

file_fetching_workflow (1)

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This workflow demonstrates interaction with an instance of an omixed server (omixed.org) hosting a very simple model and containing some sequence files. The server is available for public access so you should be able to try this out. Notes: With the versions of Taverna and Axis2 I am using, I had to massage the WSDL emitted by Axis2 in order to keep Taverna happy. This involved removing the sections relating to SOAP12. The workflow first connects to the server and obtains a ses...

Created: 2008-07-14 | Last updated: 2008-07-14

Credits: Tim Booth

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