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Nl User: Maria Paula Balcazar-Vargas

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Name: Maria Paula Balcazar-Vargas

Joined: Monday 28 November 2011 18:56:06 (UTC)

Last seen: Thursday 09 September 2021 08:55:19 (UTC)

Email (public): Not specified

Website: Not specified

Location: Amsterdam, Netherlands

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PROFILE: I am a Biologist with a PhD in Ecology and Biodiversity (2013) with a great passion for animals and plants, and 24 years (1996 -2020) of vast experience in botany, taxonomy, ethnobotany, demography, conservation and advising students. I have a strong modelling and organisational skills gained in research.

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Priority="50" Name="Grid Table 5 Dark Accent 1"/> <w:LsdException Locked="false" Priority="51" Name="Grid Table 6 Colorful Accent 1"/> <w:LsdException Locked="false" Priority="52" Name="Grid Table 7 Colorful Accent 1"/> <w:LsdException Locked="false" Priority="46" Name="Grid Table 1 Light Accent 2"/> <w:LsdException Locked="false" Priority="47" Name="Grid Table 2 Accent 2"/> <w:LsdException Locked="false" Priority="48" Name="Grid Table 3 Accent 2"/> <w:LsdException Locked="false" Priority="49" Name="Grid Table 4 Accent 2"/> <w:LsdException Locked="false" Priority="50" Name="Grid Table 5 Dark Accent 2"/> <w:LsdException Locked="false" Priority="51" Name="Grid Table 6 Colorful Accent 2"/> <w:LsdException Locked="false" Priority="52" Name="Grid Table 7 Colorful Accent 2"/> <w:LsdException Locked="false" Priority="46" Name="Grid Table 1 Light Accent 3"/> <w:LsdException Locked="false" Priority="47" Name="Grid Table 2 Accent 3"/> <w:LsdException Locked="false" Priority="48" Name="Grid Table 3 Accent 3"/> <w:LsdException Locked="false" Priority="49" Name="Grid Table 4 Accent 3"/> <w:LsdException Locked="false" Priority="50" Name="Grid Table 5 Dark Accent 3"/> <w:LsdException Locked="false" Priority="51" Name="Grid Table 6 Colorful Accent 3"/> <w:LsdException Locked="false" Priority="52" Name="Grid Table 7 Colorful Accent 3"/> <w:LsdException Locked="false" Priority="46" Name="Grid Table 1 Light Accent 4"/> <w:LsdException Locked="false" Priority="47" Name="Grid Table 2 Accent 4"/> <w:LsdException Locked="false" Priority="48" Name="Grid Table 3 Accent 4"/> <w:LsdException Locked="false" Priority="49" Name="Grid Table 4 Accent 4"/> <w:LsdException Locked="false" Priority="50" Name="Grid Table 5 Dark Accent 4"/> <w:LsdException Locked="false" Priority="51" Name="Grid Table 6 Colorful Accent 4"/> <w:Ls-->


Other contact details:

Not specified

Interests:

Matrix population models and Integral projection models

Field/Industry: Academy

Occupation/Role(s): Post-doc

Organisation(s):

University of Amsterdam

 

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4562?size=60x60 Nl Maria Paula Balcazar-Vargas
Project Biovel
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Pack Relative importance of Chinook salmon abundance on r...


Created: 2014-08-29 11:04:10 | Last updated: 2014-09-30 09:35:02

The pack contains three workflows, 13 files and 2 documentations (tutorials to run the workflows).Workflows:1) Demography of the killer whales.2) Resident killer whale-chinook salmon interactions.3) Exploration of fishing scenarios.These workflow uses input data of two different populations of Orcas in the northeastern Pacific Ocean of Canada and the U.S. But these workflows can also use input data from other populations of the Orcas in the world (see requirements for data entry in the docume...

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4562?size=60x60 Nl Maria Paula Balcazar-Vargas
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Pack Elasticity and Sensitivity of the vital rates pack


Created: 2014-08-28 08:56:24 | Last updated: 2014-08-29 14:50:26

This pack contains a workflow, a file and documentation (tutorial to run the workflow).This workflow calculate the Elasticity and Sensitivity of the vital rates. The goal in both cases is to determine which vital rates have the most influence on population growth or λ.

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4562?size=60x60 Nl Maria Paula Balcazar-Vargas
Project Biovel
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Pack Calculate and Plot abundance over the years pack


Created: 2014-08-22 07:50:23 | Last updated: 2014-08-28 13:17:48

This pack contains a workflow, a file and documentation (tutorial to run the workflow).This workflow calculates and plots the abundance per stage per year from a list of matrices.

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4562?size=60x60 Nl Maria Paula Balcazar-Vargas
Project Biovel
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Pack Variance matrix pack


Created: 2014-08-21 13:07:20 | Last updated: 2014-08-28 13:53:33

This pack contains a workflow, a file and documentation (tutorial to run the workflow).This workflow estimates the variance matrix from a list of matrices.

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4562?size=60x60 Nl Maria Paula Balcazar-Vargas
Project Biovel
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Pack Log-log plots of variance vs. sensitivity and CV vs....


Created: 2014-08-13 10:27:13 | Last updated: 2014-08-21 09:16:30

This pack contains a workflow, a file and documentation (tutorial to run the workflow).This workflow creates log-log plots of both variance vs. sensitivity and CV vs. elasticity in matrix elements. Plots are based on Figure 2 in Pfister (1998).

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4562?size=60x60 Nl Maria Paula Balcazar-Vargas
Project Biovel
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Pack Mean matrix pack


Created: 2014-07-31 13:34:16 | Last updated: 2014-08-14 17:52:30

This pack contains a workflow, a file and documentation (tutorial to run the workflow).This mean matrix workflow estimates the mean matrix from a list of matrices.

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4562?size=60x60 Nl Maria Paula Balcazar-Vargas
Project Biovel
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Pack Calculate quasi-extinction threshold pack


Created: 2014-07-30 14:00:20 | Last updated: 2014-08-14 12:05:20

This pack contains a workflow, a file and documentation (tutorial to run the workflow).This workflow estimates by simulation the quasi-extinction probability time cumulative distribution function for a structured population in an independently and identically distributed (iid) stochastic environment. This workflow is based on the popbio package (stoch.quasi.ext - Calculate quasi-extinction threshold, Stubben, Milligan and Nantel, 2013) based on the The MATLAB code in Box 7.5 (Morris and Doak ...

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4562?size=60x60 Nl Maria Paula Balcazar-Vargas
Project Biovel
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Pack Cohen cumulative distance pack


Created: 2014-07-23 13:43:22 | Last updated: 2014-07-24 08:21:00

This pack contains a workflow, a file and documentation (tutorial to run the workflow).The Cohen’s cumulative distance Workflow provides an environment to calculate the Cohen’s cumulative distance. The Cohen’s cumulative distance measures the difference between observed and expected vectors along the matrix path that the population would take to reach the expected population vector. It is a function of both the observed stage distribution (n0) and the structure of the matrix...

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4562?size=60x60 Nl Maria Paula Balcazar-Vargas
Project Biovel
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Pack Keyfitz's delta pack


Created: 2014-07-23 11:19:37 | Last updated: 2014-07-24 08:25:22

This pack contains a workflow, a file and documentation (tutorial to run the workflow).The Keyfit delta Workflow provides an environment to calculate the Keyfit delta value. Keyfitz’s delta is a measure of the distance between any two probability vectors (Keyfitz 1968). In this case is a measure of the distance between n (Observed Stage Distribution) and w (Stable Stage Distribution). The maximum value is 1 and the minimum value is 0 (when the vectors are identical).

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4562?size=60x60 Nl Maria Paula Balcazar-Vargas
Project Biovel
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Pack Simulate stochastic growth from a sequence of matric...


Created: 2014-07-10 12:05:44 | Last updated: 2014-07-30 13:48:06

This pack contains a workflow, a file and documentation (tutorial to run the workflow).The Simulate stochastic growth from a sequence of matrices Workflow provides an environment to simulate stochastic growth by projection using whole matrix selection techniques in an independently and identically distributed (iid) environment from a set of 2 or more projection matrices.Outputs:Equal selection dataStochastic projectionUnequal selection dataTo know more details about the analysis, Morris and D...

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4562?size=60x60 Nl Maria Paula Balcazar-Vargas
Project Biovel
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Pack Parametric Bootstrap or Resample a projection matrix...


Created: 2014-07-09 14:03:43 | Last updated: 2014-07-25 09:41:32

This pack contains a workflow, a file and documentation (tutorial to run the workflow). The Parametric Bootstrap or Resample a projection matrix Workflow provides an environment to resample a projection matrix using a multinomial distribution for transitions and a log normal distribution for fertilities (Stubben, Milligan, and Nantel. 2011). The resample is based on number of plants surveyed. The projection matrix A is first split into separate transition and fertility matrices. Dead fates ar...

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4562?size=60x60 Nl Maria Paula Balcazar-Vargas
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Pack Bootstrap of observed census transitions pack


Created: 2014-07-09 12:56:51 | Last updated: 2014-07-25 10:37:19

This pack contains a workflow, a file and documentation (tutorial to run the workflow).The Bootstrap of observed census transitions (confidence intervals of λ) workflow for local execution calculates bootstrap distributions of population growth rates (λ), stage vectors, and projection matrix elements by randomly sampling with replacement from a stage-fate data frame of observed transitions. The goal of a demographic analysis is very often to estimate lambda, because lambda is es...

4 items in this pack

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4562?size=60x60 Nl Maria Paula Balcazar-Vargas
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Pack Net reproductive rate (Ro) pack


Created: 2014-07-04 13:59:07 | Last updated: 2014-07-25 11:25:32

This pack contains a workflow, a file and documentation (tutorial to run the workflow).The . Net reproductive rate (Ro) Workflow provides an environment to calculate the net reproductive rate (Ro). Ro is the mean number of offspring by which a new-born individual will be replaced by the end of its life, and thus the rate by which the population increases from one generation to the next.

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4562?size=60x60 Nl Maria Paula Balcazar-Vargas
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Pack Generation time (T) pack


Created: 2014-07-04 13:20:43 | Last updated: 2014-07-25 11:22:30

This pack contains a workflow, a file and documentation (tutorial to run the workflow).The Generation Time (T) Workflow provides an environment to calculate the generation time. Th generation time is the time T required for the population to increase by a factor of Ro (net reproductive rate). In other words, T calculates how much time takes to a plant/animal to replace itself by a factor of Ro.

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4562?size=60x60 Nl Maria Paula Balcazar-Vargas
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Pack Transient dynamics pack


Created: 2014-07-04 10:59:17 | Last updated: 2014-07-25 12:17:07

This pack contains a workflow, a file and documentation (tutorial to run the workflow).The Transient dynamics or Calculate population growth rates by projection Workflow provides an environment to calculates the population growth rate and stable stage distribution by repeated projections of the equation n(t+1)=An(t) and to produce plots of the short-term dynamics and convergence to stable stage distribution using stage vector projections.Transient dynamic analysisPopulation projectionLambda o...

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4562?size=60x60 Nl Maria Paula Balcazar-Vargas
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Pack Eigen analysis pack


Created: 2014-07-03 15:57:49 | Last updated: 2014-07-25 11:18:57

This pack contains a workflow, a file and documentation (tutorial to run the workflow).The Eigen analysis workflow provides an environment for the analysis of a stage-matrix and perform several analyses on it.The Eigen analysis results are a set of demographic statistics:Lambda or dominant eigenvalue (λ).The stable stage distribution (w).The sensitivity matrixThe Elasticity matrix.Reproductive value (v).The damping ratio (ρ).

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4562?size=60x60 Nl Maria Paula Balcazar-Vargas
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Pack Damping ratio pack


Created: 2014-07-02 13:32:31 | Last updated: 2014-07-25 11:07:16

This pack contains a workflow, a file and documentation (tutorial to run the workflow).The Damping ratio pack contains a workflow that provides an environment to calculate the damping ratio of several matrices and plot them.The damping ratio can be considered as a measure of the intrinsic resilience of the population, describing how quickly transient dynamics decay following disturbance or perturbation regardless of population structure, the larger the p, the quicker the population converges ...

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4562?size=60x60 Nl Maria Paula Balcazar-Vargas
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Pack Age specific survival analysis pack


Created: 2014-07-02 11:49:01 | Last updated: 2015-05-19 09:46:30

This pack contains a workflow, a file and documentation (tutorial to run the workflow).The age-specific survival analysis pack has a workflow that analyse the basic information on the mean, variance and coefficient of variation (CV) of the time spent in each stage class and the mean and variance of the time to death.Analyses:Fundamental matrix (N)Variance (var)Coefficient of variation (CV)MeanetaVareta

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4562?size=60x60 Nl Maria Paula Balcazar-Vargas
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Pack Matrix Population Model construction pack


Created: 2014-06-19 11:23:27 | Last updated: 2014-07-25 12:48:25

This pack contains a workflow, a file and documentation (tutorial to run the workflow).Creation of a stage matrix model from demographic monitoring of individuals in an animal or plant population Workflow for local executionThe Creation of a stage matrix model Workflow allows us to construct a stage o several stage matrices. This workflow create a stage matrix based on two years census data that contains transitions probabilities from each stage to the next, of tagged or mapped individuals of...

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4562?size=60x60 Nl Maria Paula Balcazar-Vargas
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Pack Stage vectors, Survival and Growth rate curves (demo...


Created: 2014-04-03 08:11:33 | Last updated: 2014-07-25 12:41:24

This pack contains a workflow, a file and documentation (tutorial to run the workflow).The Stages vectors plots, Survival and Growth rate curves Workflow provides an environment to perform several analyses on a series of stage-matrices:Population projectionSurvival values calculations per stage per year and its respective plot;Growth rates (lambda) calculations per year and its respective plot;Stage Vectors calculations and their respective plots.

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4562?size=60x60 Nl Maria Paula Balcazar-Vargas
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Pack Life Table Response Experiments Fixed design Year Ef...


Created: 2014-02-27 12:49:10 | Last updated: 2014-08-27 09:58:12

This pack contains a workflow, a file and documentation (tutorial to run the workflow).The Life Table Response Experiments Year Effect in One Location or Place workflow provides an environment to analyse two or more matrices from different years in one location. The objective of this workflow is to determine the effects of the research years (2 or more) in one place on λ. This workflow performs a fixed LTRE, one way design (Caswell 2001).LTRE is a retrospective analysis (Caswell 1989),...

9 items in this pack

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4562?size=60x60 Nl Maria Paula Balcazar-Vargas
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Pack Life Table Response Experiments Fixed design year ef...


Created: 2014-02-21 13:12:33 | Last updated: 2014-08-21 08:06:21

This pack contains a workflow, a file and documentation (tutorial to run the workflow).The Life Table Response Experiments year effect for multiple places workflow provides an environment to analyse two or more matrices (e.g., two or more matrices of different years of one place) of two or more different locations. The objective of this workflow is to determine the effects of the research years (2 or more) on λ. This workflow performs a fixed LTRE, one way design (Caswell 2001).LTRE is...

13 items in this pack

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4562?size=60x60 Nl Maria Paula Balcazar-Vargas
Project Biovel
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Pack Life Table Response Experiments Fixed design Place e...


Created: 2014-01-29 10:42:06 | Last updated: 2014-08-14 08:04:25

This pack contains a workflow, a file and documentation (tutorial to run the workflow).The Life Table Response Experiments place effect workflow provides an environment to analyse one or more matrices (e.g. matrices of different years from the same place) from two or more places. The objective of this workflow is to determine the effects of the research places or localities (2 or more) on λ. This workflow performs a fixed LTRE, one way design (Caswell 2001). LTRE is a retrospectiv...

13 items in this pack

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4562?size=60x60 Nl Maria Paula Balcazar-Vargas
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Pack Matrix Population Models analyses pack


Created: 2013-08-14 10:37:55 | Last updated: 2014-07-25 10:56:14

This pack contains a workflow, a file and documentation (tutorial to run the workflow).The Matrix Population Models Workflow provides an environment  to perform several analyses on a stage-matrix with no density dependence:Eigen analysis.Age specific survival.Generation time (T).Net reproductive rate (Ro).Transient Dynamics.Resample a projection matrix (Confidence intervals of λ).Survival curveKeyfitz’s ΔCohen’s cumulative distance This workflow has bee...

3 items in this pack

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4562?size=60x60 Nl Maria Paula Balcazar-Vargas
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Pack Matrix Population Model construction and analysis pack


Created: 2013-08-13 14:31:09 | Last updated: 2015-06-12 13:48:43

This pack contains a workflow, a file and documentation (tutorial to run the workflow).The Matrix Population Models Workflow provides an environment for create a stage-matrix with no density dependence and perform several analyses on it.Analyses:Eigen analysis.Age specific survival.Generation time (T).Net reproductive rate (Ro).Transient Dynamics.Bootstrap of observed census transitions (Confidence intervals of λ).Survival curveKeyfitz’s ΔCohen’s cumulative distanceTh...

4 items in this pack

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4562?size=60x60 Nl Maria Paula Balcazar-Vargas
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Pack Integral Projection Models pack


Created: 2013-08-13 12:51:30 | Last updated: 2015-06-12 13:48:44

This pack contains a workflow, a file and documentation (tutorial to run the workflow).The Integral Projection Model (IPM) Workflow provides an environment for create an integral projection model and to calculate its population growth, structure, sensitivities and elasticities analyses, age-specific metrics, etc.Create an IPM with no density dependence and perform several analyses on it.Analyses:Lambda (λ).Sensitivity analysis.Elasticity analysis.Parameters elasticity and sensitivity o...

3 items in this pack

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